View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_14_89 (Length: 519)
Name: J5_14_89
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_14_89 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 245 - 442
Target Start/End: Original strand, 37560486 - 37560683
Alignment:
| Q |
245 |
tactcacatgtaaatggaggaattcaaattcaaactccgatcaataattttgacgtttttatccgttaaactatgtatgtggacccaaaactagttcatt |
344 |
Q |
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| T |
37560486 |
tactcacatgtaaatggaggaattcaaattcaaactccgatcaataattttgacgtttttatccgttaaactatgtatgtggacccaaaactagttcatt |
37560585 |
T |
|
| Q |
345 |
caaccggaccaaaattgacgccactatacatggaaaaaagataataacttgtgtccaaaagataatatctttttgaccccnaaagaataagaaaaagg |
442 |
Q |
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| T |
37560586 |
caaccggaccaaaattgacgccactatacatggaaaaaagataataacttgtgtccaaaagataatatctttttgaccccaaaagaataagaaaaagg |
37560683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 37560309 - 37560427
Alignment:
| Q |
68 |
attaatcaaaataaattgcttgaatatcaagattgagtgaactctcctagaaaaaagattgagtgagctcaatccaccagaggtataaggagcatgtttt |
167 |
Q |
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| T |
37560309 |
attaatcaaaataaattgtttgaatatcaagattgagtgaactctcctagaaaaaagattgagtgagctcaatccaccagaggtataaggagcatgtttt |
37560408 |
T |
|
| Q |
168 |
taaagagttgaatcgaatc |
186 |
Q |
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| T |
37560409 |
taaagagttgaatcgaatc |
37560427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 37560755 - 37560827
Alignment:
| Q |
1 |
ataacatcattctctccacgtctgtgtttccaacaatattcaacttcttcaacaacaaaattcatctattaat |
73 |
Q |
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| T |
37560755 |
ataacatcattctctccacgtctgtgtttccaacaatattcaacttcttcaacaacaaaattcatctattaat |
37560827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 509
Target Start/End: Original strand, 37560721 - 37560750
Alignment:
| Q |
480 |
gaggaaaagacatgatactatgttgatcgc |
509 |
Q |
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| T |
37560721 |
gaggaaaagacatgatactatgttgatcgc |
37560750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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