View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_14_92 (Length: 707)
Name: J5_14_92
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_14_92 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 626; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 1 - 707
Target Start/End: Complemental strand, 26554051 - 26553346
Alignment:
| Q |
1 |
gttgaacaggctatttcttcaaggcctggagaaccatggatggggtgactggcgaagtatatcaaggtacagtgtggtgacaagaacacctacacaagta |
100 |
Q |
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| T |
26554051 |
gttgaacaggctatttcttcaaggcctggagaaccatggatggggtgactggcgaagtatatcaaggtacagtgtggtgacaagaacacctacacaagta |
26553952 |
T |
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| Q |
101 |
gcaagccatgctcagaaatacaaaattcgtcaggattcaatgaaagagaagaaagaaagaaggcgatccagcatacatgatgtcacctttgtcaaaaatg |
200 |
Q |
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| T |
26553951 |
gcaagccatgctcagaaatacaaaattcgtcaggattcaatgaaagagaagaaagaaagaaggcgatccagcatacatgatgtcacctttgtcaaaaatg |
26553852 |
T |
|
| Q |
201 |
gagacatttcagcacctcaaggaccaattaccggtcaagcaagcaattctgctgcaaattctgctggacaatcagccgaacaagctcctccagtcccacc |
300 |
Q |
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| T |
26553851 |
gagacatttcagcacctcaaggaccaattaccggtcaagcaagcaattctgctgcaaattctgctggacaatcagccgaacaagctcctccagtcccacc |
26553752 |
T |
|
| Q |
301 |
tgctggaatcaaaactcttgataatcctccatccccacctgctggaatacacgctgctcctaggatcgggcaacctataggaggaccagttgtatctgca |
400 |
Q |
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| T |
26553751 |
tgctggaatcaaaactcttgataatcctccatccccacctgctggaatacacgctgctcctaggatcgggcaacctataggaggaccagttgtatctgca |
26553652 |
T |
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| Q |
401 |
gttggtactacagtgaatttgactgctcccggagacatggattatggtcttggaccngtttctgagacagttatgccaggggtaccnatgaacctgggtc |
500 |
Q |
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| T |
26553651 |
gttggtactacagtgaatttgactgctcccggagacatggattatggtcttggaccagtttctgagacagttatgccaggggtaccaatgaacctgggtc |
26553552 |
T |
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| Q |
501 |
ctatgacatatgccatgctacatacatatgctccatcatgaagtggttataagaggcgcngtgtacatgcatagaaagaacatttagntttttaattctt |
600 |
Q |
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| T |
26553551 |
ctatgacatatgccatgctacatacatatgctcaatcatgaagtggttataagaggcgcagtgtacatgcatagaaagaacatttag-tttttaattctt |
26553453 |
T |
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| Q |
601 |
tttatattcgtacnttggtgcttgtatccaagctagagnnnnnnngctcctncaattattttgaanaananatgaatatttgacatccttnacntaggac |
700 |
Q |
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||||||||||||| ||| |||||||||||||||||||| |||| | ||||||||||||| || | ||||||||||||||||||| | |||||| |
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| T |
26553452 |
tttatattcgtacattgttgcttgtatccaagctagagtttttttgctcattcaattattttgaataagacatgaatatttgacatccttagcataggac |
26553353 |
T |
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| Q |
701 |
ngcnttt |
707 |
Q |
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|| ||| |
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| T |
26553352 |
tgcattt |
26553346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 73 - 243
Target Start/End: Original strand, 26776869 - 26777039
Alignment:
| Q |
73 |
tgtggtgacaagaacacctacacaagtagcaagccatgctcagaaatacaaaattcgtcaggattcaatgaaagagaagaaagaaagaaggcgatccagc |
172 |
Q |
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||||||||||| ||||| ||||||| ||||||| |||||||| |||||| | ||| | |||||| ||||||||||||||||||||||||||||||| |
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| T |
26776869 |
tgtggtgacaaaaacacatacacaaatagcaagtcatgctcaaaaatacttcaaaggtctgaattcaacgaaagagaagaaagaaagaaggcgatccagc |
26776968 |
T |
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| Q |
173 |
atacatgatgtcacctttgtcaaaaatggagacatttcagcacctcaaggaccaattaccggtcaagcaag |
243 |
Q |
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| T |
26776969 |
agacatgatgtcacatatgtcgaaaatggagacatttcagcacctcatggagcaattaccggtcaagcaag |
26777039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 426 - 533
Target Start/End: Original strand, 26777213 - 26777320
Alignment:
| Q |
426 |
ctcccggagacatggattatggtcttggaccngtttctgagacagttatgccaggggtaccnatgaacctgggtcctatgacatatgccatgctacatac |
525 |
Q |
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|||||||| | |||| ||||||| ||||||| |||||| |||| ||||||||||||||| |||||| ||||||||||||||| | |||||| | |||| |
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| T |
26777213 |
ctcccggacagatggcttatggtattggaccagtttcttggacaagtatgccaggggtaccaatgaacttgggtcctatgacatttcccatgcaaaatac |
26777312 |
T |
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| Q |
526 |
atatgctc |
533 |
Q |
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|||||||| |
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| T |
26777313 |
atatgctc |
26777320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 353 - 386
Target Start/End: Original strand, 26777170 - 26777203
Alignment:
| Q |
353 |
gctgctcctaggatcgggcaacctataggaggac |
386 |
Q |
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| T |
26777170 |
gctgctcataggatcgggcaacctataggaggac |
26777203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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