View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5_15_71 (Length: 325)
Name: J5_15_71
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_15_71 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 35366095 - 35365832
Alignment:
| Q |
1 |
tgatttagtgcagaccaacctatanagaacaagttctatggaaataagcataagaagtgcaacnaaagaagcaatcgaaaaaanaaatggatcaaaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
35366095 |
tgatttagtgcagaccaacctatacagaacaagttctatggaaataagcataagaaatgcaacaaaagaagcaattgaaaaaataaatggatcaaaattg |
35365996 |
T |
|
| Q |
101 |
gagtgcatttgcagtggacagagtggtgcaaacagatcatgtcgacattgttttatgagacaagtctctagncagcttcagaatgctggttttaacngtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
35365995 |
gagtgcatttgcagtggacagagtggtgcaaacagatcatgtcgacattgttttatgagacaagtctctagccagcttcagaatgctggttttaacagtg |
35365896 |
T |
|
| Q |
201 |
ccatttgtaatactaaatggataaattcatatactcttcnatnngggaatttcanttgattaat |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||||| |
|
|
| T |
35365895 |
ccatttgtaatactaaatggataaattcatatactcttccatcaggtaatttcatttgattaat |
35365832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 264
Target Start/End: Complemental strand, 35374114 - 35373853
Alignment:
| Q |
3 |
atttagtgcagaccaacctatanagaacaagttctatggaaataagcataagaagtgcaacnaaagaagcaatcgaaaaaanaaatggatcaaaattgga |
102 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||| | |||||||||||||| | |||||| ||||||||||| || ||| | || |||||||||| || |
|
|
| T |
35374114 |
attttgtgcagacaaacctatatagaacaagttctgttgaaataagcataaggaatgcaacgaaagaagcaattgaggaaatagatagatcaaaattaga |
35374015 |
T |
|
| Q |
103 |
gtgcatttgcagtggacagagtggtgcaaacagatcatgtcgacattgttttatgagacaagtctctagncagcttcagaatgctggttttaacngtgcc |
202 |
Q |
| |
|
||| ||| ||| |||||||||||| | |||||| |||| | | ||||| ||||||||||||||||| | ||||| |||| |||||||||| ||||| |
|
|
| T |
35374014 |
gtgttgttgtagtagacagagtggtgaagccagatcttgtccaaactgtttcatgagacaagtctctagctaccttcaaaatggtggttttaacagtgcc |
35373915 |
T |
|
| Q |
203 |
atttgtaatactaaatggataaattcatatactcttcnatnngggaatttcanttgattaat |
264 |
Q |
| |
|
||||||||||||||||||| || |||| ||| ||||| || || ||||| | || |||||| |
|
|
| T |
35373914 |
atttgtaatactaaatggacaagttcacataatcttccatcaggtaatttaatttaattaat |
35373853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 35366346 - 35366280
Alignment:
| Q |
259 |
attaattgtgtttttatttattttcntcntgngnnaataggtttttatttcnaaactataaccttga |
325 |
Q |
| |
|
||||||||||||||||||||||||| || || | |||||||||||||||| ||||||||||||||| |
|
|
| T |
35366346 |
attaattgtgtttttatttattttcttcttgtgctaataggtttttatttctaaactataaccttga |
35366280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14184 times since January 2019
Visitors: 8375