View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5_15_75 (Length: 331)
Name: J5_15_75
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_15_75 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 46 - 328
Target Start/End: Original strand, 54081503 - 54081785
Alignment:
| Q |
46 |
ttaattcaggaaatgcatgaattgactaatatataactaactaatatggttgacacaaataaangaaaatataagtagcagctggtgtgaatgaaataat |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
54081503 |
ttaattcaggaaatgcatgaattgactaatatataaataactaatatggttgacacaaataaaagaaaatataagtagcagctggtgtgaatgaaataat |
54081602 |
T |
|
| Q |
146 |
gaacacgttagatggttgattccntgcatcatgtgtgttttagtgaagaaaaattngttgtgtttcaatttcaaccttttgttttagtcttcttgttatg |
245 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54081603 |
gaacacgttagatggttgattccatgcatcatgtgtgttttagtgaagaaaaattagttgtgtttcaatttcaaccttttgttttagtcttcttgttatg |
54081702 |
T |
|
| Q |
246 |
aaaatttccaatatctacttgtaatttggcatagctttaactttttgagttgnagatgatggcactgntgtattgtaccntgg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| |
|
|
| T |
54081703 |
aaaatttccaatatctacttgtaatttggcatagctttaactttttgagttgtagatgatggcactgttgtattgtaccatgg |
54081785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 309
Target Start/End: Original strand, 54085019 - 54085174
Alignment:
| Q |
157 |
atggttgattccntgcatcatgtgtgttttagtgaagaaaaattngttgtgtttcaatttcaaccttttgttttagtcttct--tgttatga----aaat |
250 |
Q |
| |
|
||||||||| || |||||||||||||||||||| || |||||| |||||||||||||| |||||||| ||||||||||| | |||||||| |||| |
|
|
| T |
54085019 |
atggttgatgccatgcatcatgtgtgttttagt-aataaaaatcagttgtgtttcaatt-caaccttt-gttttagtcttttcctgttatgattccaaat |
54085115 |
T |
|
| Q |
251 |
ttccaatatctacttgtaatttggcatagctttaactttttgagttgnagatgatggca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
54085116 |
ttccaatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggca |
54085174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7745 times since January 2019
Visitors: 7737