View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_15_79 (Length: 325)
Name: J5_15_79
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_15_79 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 2102294 - 2102106
Alignment:
| Q |
1 |
gttgggttcccaagtgaagtcaaattcagccctgcaagccttaatttaggtaatgttgcatttgaagtatagaagttttgttggaataacaactcattct |
100 |
Q |
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| T |
2102294 |
gttgggttcccaagtgaagtcaaattcagccctgcaagccttaatttaggtaatgttgcatttgaagtatagaagttttgttggaataacaactcattct |
2102195 |
T |
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| Q |
101 |
ttgtactgctggaaccagaaataatatccttcattcatcatctgtttgcaggatcaagaactgttgccggaagtgctgcaggtggtaca |
189 |
Q |
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| T |
2102194 |
ttgtactgctggaaccagaaataatatccttcattcatcatctgtttgcaggatcaagaactgttgccggaagtgctgcaggtggtaca |
2102106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 2095864 - 2095679
Alignment:
| Q |
1 |
gttgggttcccaagtgaagtcaaattcagccctgcaagccttaatttaggtaatgttgcatttgaagtatagaagttttgttggaataacaactcattct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
2095864 |
gttgggttcccaagtgaagtcaaattcagccctgcaagccttaatttaggtaatgttgcatttgaagtatagaagttttgttgtaataacaactcgttct |
2095765 |
T |
|
| Q |
101 |
ttgtactgctggaaccagaaataatatccttcattcatcatctgtttgcaggatcaagaactgttgccggaagtgctgcaggtggtaca |
189 |
Q |
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| T |
2095764 |
ttgtaccgctggaaccagaaataatatcctccat---tcatctgtttgcaggatcaagaactgttgccggaagtgttacaggtggtaca |
2095679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 2102420 - 2102290
Alignment:
| Q |
195 |
aaattaatggtgacttctatgaaggcgttagctaaaacattggattttataattgacacggcttcgggtgatcacccatttgatccttacatgtcacttc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102420 |
aaattaatggtgacttctatgaaggcgttagctaaaacattggattttataattgacacggcttcgggtgatcacccatttgatccttacatgtcacttc |
2102321 |
T |
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| Q |
295 |
tgaagatatctggtgttctggccttagttgg |
325 |
Q |
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| T |
2102320 |
tgaagatatctggtgttctggccttagttgg |
2102290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 201 - 325
Target Start/End: Complemental strand, 2095984 - 2095860
Alignment:
| Q |
201 |
atggtgacttctatgaaggcgttagctaaaacattggattttataattgacacggcttcgggtgatcacccatttgatccttacatgtcacttctgaaga |
300 |
Q |
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||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2095984 |
atggtgacttctatgcaggcgttggctaaatcattggattttataattgacacggcatcgggtgatcacctgtttgatccttacatgtcacttctgaaga |
2095885 |
T |
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| Q |
301 |
tatctggtgttctggccttagttgg |
325 |
Q |
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||||||||||||||| ||||||||| |
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| T |
2095884 |
tatctggtgttctggtcttagttgg |
2095860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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