View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_15_86 (Length: 308)
Name: J5_15_86
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_15_86 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 154 - 308
Target Start/End: Original strand, 3425146 - 3425300
Alignment:
| Q |
154 |
attaataaatacactattttctaataaaaaatcagttatgctttttaatacaagcaaaaaattcgagcacattcaagaagatgcattggctagtcgttag |
253 |
Q |
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| T |
3425146 |
attaataaatacactattttctaataaaaaatcagttatgctttttaatacaagcaaaaaattcgagcacattcaagaagatgcattggctagtcgttag |
3425245 |
T |
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| Q |
254 |
agtgagaggaaaactcccaaaaatccagctcctataaccttaaacagttaaattc |
308 |
Q |
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| T |
3425246 |
agtgagaggaaaactcccaaaaatccagctcctataaccttaaacagttaaattc |
3425300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 3425296 - 3425454
Alignment:
| Q |
1 |
aattctgcactcatttcttcagcaaatatctttaaaggcaaaagcaaaaccaacgcaaaatatagaaagaccaaaaagaagcagagagagtagtgaatga |
100 |
Q |
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| T |
3425296 |
aattctgcactcatttcttcagcaaatatctttaaaggcaaaagcaaaaccaacgcaaaatatagaaagaccaaaaagaagcagagagagtagtgaatga |
3425395 |
T |
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| Q |
101 |
tggaagattaaaaataaataacaaattatcaaatcacaacattttcctattagattaat |
159 |
Q |
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| T |
3425396 |
tggaagattaaaaataaataacaaattatcaaatcacaacattttgatattagattaat |
3425454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 3428661 - 3428771
Alignment:
| Q |
175 |
taataaaaaatc-agttatgctttttaatacaagcaaaaaattcgagcacattc---aagaagatgc-attggctagtcgttagagtgagaggaaaactc |
269 |
Q |
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| T |
3428661 |
taataaaaaatctagttatgcttttcgagacaagcgaaaaattagagcacattcaagaagaagatgcaattggctggtccttggaatgagaggaaaactc |
3428760 |
T |
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| Q |
270 |
ccaaaaatcca |
280 |
Q |
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| T |
3428761 |
ctaaaattcca |
3428771 |
T |
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