View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_15_95 (Length: 245)
Name: J5_15_95
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_15_95 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 65 - 243
Target Start/End: Original strand, 15977075 - 15977252
Alignment:
| Q |
65 |
caattaattcctttcctcatatctctatttgatccccataaaaaatatgcttaaacgacatgatggaattgcttttggatatagngctggnatgaacaaa |
164 |
Q |
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| T |
15977075 |
caattaattcctttcctcatatctctatttgatccccataaaaaatatgcttaaacgacatgatggaattgcttttggatatagtgctggcatgaacaaa |
15977174 |
T |
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| Q |
165 |
atttngagaattgaacaattctgccacaaataagagntgnttgccaaanattcaattgggncgtgacgntttcaagttt |
243 |
Q |
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| T |
15977175 |
aataggagaattgaacaattctgccacaaataagagctgtttg-caaacattcaattggcccgtgacagtttcaagttt |
15977252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 15977450 - 15977522
Alignment:
| Q |
1 |
tataataacaaagtactccacagagtagtattatcctagaaagaggaaagaaattcttaaancacaattaatt |
73 |
Q |
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| T |
15977450 |
tataataacaaagtactccacagagtagtattatcctagaaagaggaaagaaattcttaaattacaattaatt |
15977522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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