View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_16_28 (Length: 344)
Name: J5_16_28
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_16_28 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 65 - 344
Target Start/End: Complemental strand, 26340351 - 26340072
Alignment:
| Q |
65 |
caattgatttgcaacnccctggcagggtaggattgtatgaagcaattttcaagattgaatggaaccatgcggaggttacataagatttttcgatcatgcc |
164 |
Q |
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| T |
26340351 |
caattgatttgcaactacatggcagggtaggattgtatgaagcaattttcaagattgaatggaaccatgcggaggttacataagatttttcgatcatgcc |
26340252 |
T |
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| Q |
165 |
atttcacttttaaggaaactcgaatgcncatattcaaacaggaatgtagcatagagaatattcnatcaccaatccttttaaaaagagtgattcanatgat |
264 |
Q |
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| T |
26340251 |
atttcacttttaaggaaactcgaatgcacatattcaaacaggaatgtagcatagagaatattcaatcaccaatccttttaaaaagagtgattcagatgat |
26340152 |
T |
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| Q |
265 |
gatgttcttgatgatgttgatgacaacnaccactcttcacnatggntacnaccaancncntattcaaacatgtgactttt |
344 |
Q |
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| T |
26340151 |
gatgttcttgatgatgttgatgacaacgaccactcttcacaatggttacgaccaatcacatattcaaacatgtgactttt |
26340072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26340076 - 26340007
Alignment:
| Q |
1 |
cttttgacaaaacttgtgtaccagaaacaatgaataaaatcattgtcatgcatgtgaaagtggtcaattg |
70 |
Q |
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| T |
26340076 |
cttttgacaaaacttgtgcaccagaaacaatgaataaaatcattgtcatgcatgtgaaagtggtcaattg |
26340007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 249
Target Start/End: Original strand, 28152559 - 28152688
Alignment:
| Q |
120 |
tgaatggaaccatgcggaggttacataagatttttcgatcatgccatttcacttttaaggaaactcgaatgcncatattcaaacaggaatgtagcataga |
219 |
Q |
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| T |
28152559 |
tgaatggaaccatgcggtggttaggtatgatttttcgatcatgccatttgac-cttaaggaaagtcgaatgcatatattcaaacaagaaagcagcatgga |
28152657 |
T |
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| Q |
220 |
gaatattc-natcaccaatccttttaaaaag |
249 |
Q |
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| T |
28152658 |
ggatattcagttcaccaatccttataaaaag |
28152688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 287
Target Start/End: Complemental strand, 28095239 - 28095073
Alignment:
| Q |
121 |
gaatggaaccatgcggaggttacataagatttttcgatcatgccatttcacttttaaggaaactcgaatgcncatattcaaacaggaatgtagcatagag |
220 |
Q |
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|||||||||||||||| |||||||| ||| |||| | |||||||| || ||||||||| |||||||| |||||| ||||| ||| |||| || ||| |
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| T |
28095239 |
gaatggaaccatgcggtggttacatgtgatatttcaactgtgccatttgac-cttaaggaaagtcgaatgcacatatttaaacaagaaagtagaatggag |
28095141 |
T |
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| Q |
221 |
aatattc-natcaccaatccttttaaaaagagtgattcanatgatgatgttcttgatgatgttgatga |
287 |
Q |
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|||||| ||||||||| || ||||||||| || | | |||||||| | |||||||| |||||| |
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| T |
28095140 |
gatattcagttcaccaatcattataaaaagagagaattagttgatgatgatgatgatgatgatgatga |
28095073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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