View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_17_95 (Length: 277)
Name: J5_17_95
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_17_95 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 51054460 - 51054697
Alignment:
| Q |
1 |
ctcaaggtcattgtggtgattatagttgaataatatgctaaagtgaggcgttgaataattgaattaaccttagagcatttgcctctagagtaaatttatg |
100 |
Q |
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| T |
51054460 |
ctcaaggtcattgtggtgattatagttgaataatatgctaaagtgaggcgttgaataattgaattaaccttagagcatttgcctctagagtaaatttatg |
51054559 |
T |
|
| Q |
101 |
gcccccctgccttagggacatgatagaactgtgttaaagatagattctcaccgtcattggcaataatgaagcattaggccaaaaacctcttaaacatata |
200 |
Q |
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| T |
51054560 |
gcccccctgccttagggacatgatagaactgtgttaaagatagattctcaccgtcattggcaataatgaagcattaggccaaaaacctcttaaacatata |
51054659 |
T |
|
| Q |
201 |
taattacaagcacaagtcagaaaggcaattaacaatgt |
238 |
Q |
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| T |
51054660 |
taattacaagcacaagtcagaaaggcaattaacaatgt |
51054697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 51054436 - 51054464
Alignment:
| Q |
249 |
tgcaattgacaccaaatcaaagaactcaa |
277 |
Q |
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| T |
51054436 |
tgcaattgacaccaaatcaaagaactcaa |
51054464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 34620151 - 34619913
Alignment:
| Q |
13 |
gtggtgattatagttgaataatatgctaaagtgaggcgttgaataattgaattaaccttagagcatttgcctctagagtaaatttatggcccccctgcct |
112 |
Q |
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| T |
34620151 |
gtggtgattatagttgaataaaatgttaaagtgaggcgttgaat--------taaccttagagcatttgcttctagagtaaatatatggaccctc--cct |
34620062 |
T |
|
| Q |
113 |
tagggacatgatagaactg------------------tgttaaagatagattctcaccgtcattggcaataatgaagcattaggcca----aaaacctct |
190 |
Q |
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| T |
34620061 |
tagggacatgatagaaatgaaagacaatgatgaaatgtgttaaagatagattctcaccgtcattgggaataatgaagcattaggccaaattaaaacctct |
34619962 |
T |
|
| Q |
191 |
taaaca--tatataattacaagcacaagtcagaaaggcaattaacaatg |
237 |
Q |
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|||||| || |||||||||||| |||||||||||| ||||||||||| |
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| T |
34619961 |
taaacatgtacataattacaagcctaagtcagaaaggtaattaacaatg |
34619913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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