View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_2_11 (Length: 200)
Name: J5_2_11
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_2_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 709696 - 709538
Alignment:
| Q |
42 |
attaatcacacttttaaanggttactaaccaaacttttcaagtgtatgcttgaacacaagttatggttaataatatcatgtatatttgaaaacctaaaaa |
141 |
Q |
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| T |
709696 |
attaatcacacttttaaatggttactaaccaaacttttcaagtgtatgcttgaacacaagttatggttaataatatcatgtatatttgaaaacctaaaaa |
709597 |
T |
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| Q |
142 |
ttcatgtataatttgaacacnatttggatggttattaacgaatatatgtatgttagaac |
200 |
Q |
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| T |
709596 |
ttcatgtataatttgaacacaatttggatggttattaacgaatatatgtatgttagaac |
709538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 709542 - 709496
Alignment:
| Q |
1 |
agaacatctaaataatgtggttaatgacgttcaaaatcgtgattaat |
47 |
Q |
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| T |
709542 |
agaacatctaaataatgtggttaatgacgttcaaaatcgtgattaat |
709496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 19809008 - 19808924
Alignment:
| Q |
91 |
ttgaacacaagttatggttaata-atatcatgtatatttgaaaacctaaaaattcatgtataatttgaacacnatttggatggttat |
176 |
Q |
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| T |
19809008 |
ttgaacaaaagttgtggttaatacatttcatgtatatttgaaaacctcagaa-tcatgtat-atttgaacatgatttgaatggttat |
19808924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 28303347 - 28303265
Alignment:
| Q |
62 |
gttactaaccaaacttttcaagtgtatgcttgaacacaagttatggttaata-atatcatgtatatttgaaaacctaaaaatt |
143 |
Q |
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| T |
28303347 |
gttattaaccacaattatcatgtgtatatttgaacacaaattgtggttaatagatatcatgtatatttgaaaacttgaaaatt |
28303265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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