View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5_2_14 (Length: 410)
Name: J5_2_14
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_2_14 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 153 - 410
Target Start/End: Original strand, 43893095 - 43893352
Alignment:
| Q |
153 |
attaattagcatcttagctcaaagttccttattattttccccatcatcacataaagcaccacacacttcaaagccttcttctgctcatttatgaaattca |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43893095 |
attaattagcatcttagctcaaagttccttattattttccccatcatcacataaagcaccacacacttcaaagccttcttctgctcatttatgaaattca |
43893194 |
T |
|
| Q |
253 |
agtacaggcaaataaggatcaatatggaaggcacggaaacttttaaaaccagcagaaatgccaagttgtttgaattgttcttcagttctgtgttttccct |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43893195 |
agtacaggcaaataaggatcaatatggaaggcacggaaacttttaaaaccagcagaaatgccaagttgtttgaattgttcttcagttctgtgttttccct |
43893294 |
T |
|
| Q |
353 |
tggttctatacattgtcattatccatatgtcagctgccaacaatgctcttgttctttt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43893295 |
tggttctatacattgtcattatccatatgtcagctgccaacaatgctcttgttctttt |
43893352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 43893348 - 43893507
Alignment:
| Q |
1 |
cttttactctcatcggtctgctccggtaacaccggttcacaaagaatcaattttccggccaccggaagagccttgtaacaactttgcaaggccttcttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43893348 |
cttttactctcatcggtctgctccggtaacaccggttcacaaagaatcaattttccggccaccggaagagccttgtaacaactttgcaaggccttcttga |
43893447 |
T |
|
| Q |
101 |
attcttcatctgtccatgttaacactgtccactgcaaaacaataattatactattaatta |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43893448 |
attcttcatctgtccatgttaacactgtccactgcaaaacaataattatactattaatta |
43893507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 209 - 409
Target Start/End: Original strand, 43903743 - 43903943
Alignment:
| Q |
209 |
caccacacacttcaaagccttcttctgctcatttatgaaattcaagtacaggcaaataaggatcaatatggaaggcacggaaacttttaaaaccagcaga |
308 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
43903743 |
caccgcacacttcaaaggcttcttctgctcatttctgaaattctagaacaggaaaataaggatcaatgtggaaggcacgaaaacgaagaaaaccagcaga |
43903842 |
T |
|
| Q |
309 |
aatgccaagttgtttgaattgttcttcagttctgtgttttcccttggttctatacattgtcattatccatatgtcagctgccaacaatgctcttgttctt |
408 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| | | ||||||||||||||||||| |
|
|
| T |
43903843 |
aatgccaagctgtttgaattgttcttcagttctgtgttttcccttagttttatacattgtcattatgaatatgtcacccgacaacaatgctcttgttctt |
43903942 |
T |
|
| Q |
409 |
t |
409 |
Q |
| |
|
| |
|
|
| T |
43903943 |
t |
43903943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 43903940 - 43904091
Alignment:
| Q |
1 |
cttttactctcatcggtctgctccggtaacaccggttcacaaagaatcaattttccggccaccggaagagccttgtaacaactttgcaaggccttcttga |
100 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||| || ||||||| ||||||||||||| |||||||||||||||||| || | |||||| |||||||| |
|
|
| T |
43903940 |
ctttgactctcatcggtcagctccggtgacactggctcacaaacaatcaattttccgttcaccggaagagccttgtagcagttctgcaagaccttcttgc |
43904039 |
T |
|
| Q |
101 |
attcttcatctgtccatgttaacactgtccactgcaaaa-caataattatac |
151 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
43904040 |
attcttcatctgtccatgttaacattgtccactgcaaaataaataattatac |
43904091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 11360 times since January 2019
Visitors: 8091