View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_2_19 (Length: 638)
Name: J5_2_19
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_2_19 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 184 - 612
Target Start/End: Original strand, 26823449 - 26823878
Alignment:
| Q |
184 |
tattaatgagagaagaaagttgtgcttttaaaagttgactttaaaatgaaaaagtcaacattaaaaattcacctctctttcattgtacattgggatctgg |
283 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26823449 |
tattaatgagagaagaaagttgtgcttttaaaagttgactttaaaatgaaaaagtcaacattaaaaattcacctctctttcattgtacattgggatctgg |
26823548 |
T |
|
| Q |
284 |
acaagaaccatgggataataggagtttcccaactcaacatcatcctcaatagcctcaaatttataacgtttctctggtgttcttttaaacaacttcacat |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26823549 |
acaagaaccatgggataataggagtttcccaactcaacatcatcctcaatagcctcaaatttataacgtttctctggtgttcttttaaacaacttcacat |
26823648 |
T |
|
| Q |
384 |
aacaaatgacaattgccatgtaaactttctcaaccaacattatcaatgacaaacctaagcacaaatacactgtccatctcaacattggcactatcaaagg |
483 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26823649 |
aacaaatgacaattgccatgtaaactttctcaaccaacattatcaatgacaaacctaagcacaaatacactgtccatctcaacattggcactatcaaagg |
26823748 |
T |
|
| Q |
484 |
ttctctgatattcttccatatgaacccaagttgcataacacctccttcccttgctactttaaatgcctccattttttggatcgacac-aatgggaaaggc |
582 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||| |
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| T |
26823749 |
ttctctgatattcttccatatgaactcaagttgcataacaactccttcacttgctactttaaatgcctccattttttgtatcaacacaaatgggaaaggc |
26823848 |
T |
|
| Q |
583 |
aatgacccccatgggtgaaatggaagctaa |
612 |
Q |
| |
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|||||||| | ||| ||||||| ||||||| |
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|
| T |
26823849 |
aatgacccacttggttgaaatgaaagctaa |
26823878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 197 - 557
Target Start/End: Original strand, 26799370 - 26799730
Alignment:
| Q |
197 |
agaaagttgtgcttttaaaagttgactttaaaatgaaaaagtcaacattaaaaattcacctctctttcattgtacattgggatctggacaagaaccatgg |
296 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||||||| |
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|
| T |
26799370 |
agaaagttgtggttttaaaagctgactttaaaagtaaaaagtcaacattgaaaattcacctctctttcattgtacattggaacttgaacaagaaccatgg |
26799469 |
T |
|
| Q |
297 |
gataataggagtttcccaactcaacatcatcctcaatagcctcaaatttataacgtttctctggtgttcttttaaacaacttcacataacaaatgacaat |
396 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26799470 |
gataattagagtttcccaactcaacatcatcctcaatagccttaaatttataacacttctctggtgttctcttaaacaacttcacataacaaatgacaat |
26799569 |
T |
|
| Q |
397 |
tgccatgtaaactttctcaaccaacattatcaatgacaaacctaagcacaaatacactgtccatctcaacattggcactatcaaaggttctctgatattc |
496 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26799570 |
tgccatgtatactttttcaaccaacattatcaatgacaaacctaagcacaaatacactgtccatctcaacattggcactatcaaaggttctctgatattc |
26799669 |
T |
|
| Q |
497 |
ttccatatgaacccaagttgcataacacctccttcccttgctactttaaatgcctccattt |
557 |
Q |
| |
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|||||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||||| |
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|
| T |
26799670 |
ttccatatgaactcaagttgcataccaactccttcacttgctactttaaatgcctccattt |
26799730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 26823885 - 26824074
Alignment:
| Q |
1 |
ttatggttccttatatataaagagaatagatgcaggacagaggaatgacagtgtaaagcaaataaaaggataatataaaaacaatgcatgtttgtgtgat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26823885 |
ttatggttccttatatataaagagaatagatgcaggacagaggaatgacagtgtaaagcaaataaaaggataatataaaaacaatgcatgtttgtgtgat |
26823984 |
T |
|
| Q |
101 |
tcagatttataagagctagaataaataaaaatatttttacatatagacaattttatccgtgacgatcggatcgaaccacaatttattaat |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26823985 |
tcagatttataagagctagaataaataaaaatatttttacatatagacaattttatccgtgacgatcggatcgaaccacaatttattaat |
26824074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 247 - 560
Target Start/End: Original strand, 26786644 - 26786957
Alignment:
| Q |
247 |
aaaattcacctctctttcattgtacattgggatctggacaagaaccatgggataataggagtttcccaactcaacatcatcctcaatagcctcaaattta |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| || || |||| |||||| |||||||||||||||||| ||||| ||| ||||| |
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|
| T |
26786644 |
aaaattcacctctctttcattgtacattgggatttgaacaagaacaatagggtaattagagttttccaactcaacatcatccttaatagtctcccattta |
26786743 |
T |
|
| Q |
347 |
taacgtttctctggtgttcttttaaacaacttcacataacaaatgacaattgccatgtaaactttctcaaccaacattatcaatgacaaacctaagcaca |
446 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||||| || |||||||||| | || ||| | |
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|
| T |
26786744 |
taacgtttctcaggtgttcttttaaacaacttcactaaacaaatcacaattcccatgtaaactatctcaaccaatatcatcaatgacatgcttaggcaga |
26786843 |
T |
|
| Q |
447 |
aatacactgtccatctcaacattggcactatcaaaggttctctgatattcttccatatgaacccaagttgcataacacctccttcccttgctactttaaa |
546 |
Q |
| |
|
| |||||| ||||| ||||||||| |||||||||||||| || ||| |||| || ||| ||||||||||| || ||||||| || ||||||| ||| |
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| T |
26786844 |
taaacactgcagctctcagcattggcacgatcaaaggttctcttattttcctccaaataaacgcaagttgcataccaactccttcactagctacttgaaa |
26786943 |
T |
|
| Q |
547 |
tgcctccatttttt |
560 |
Q |
| |
|
||||||| |||| |
|
|
| T |
26786944 |
cacctccatatttt |
26786957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 232 - 434
Target Start/End: Original strand, 26833418 - 26833620
Alignment:
| Q |
232 |
aaaaagtcaacattaaaaattcacctctctttcattgtacattgggatctggacaagaaccatgggataataggagtttcccaactcaacatcatcctca |
331 |
Q |
| |
|
||||| |||| ||| ||||||||||||||||||||| |||||||| | || ||||||||||| || |||| ||||||||||||||||||||||||| | |
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|
| T |
26833418 |
aaaaaatcaatattgaaaattcacctctctttcattatacattggaacttgaacaagaaccatagggtaattagagtttcccaactcaacatcatcctta |
26833517 |
T |
|
| Q |
332 |
atagcctcaaatttataacgtttctctggtgttcttttaaacaacttcacataacaaatgacaattgccatgtaaactttctcaaccaacattatcaatg |
431 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||| |||||||||||||||| |||| |||||| ||||||||||| ||||||||||||| ||||| | |
|
|
| T |
26833518 |
atagtctcccatttataacgtttctctggttttctaccaaacaacttcacataagaaatcacaattcccatgtaaactctctcaaccaacatcatcaacg |
26833617 |
T |
|
| Q |
432 |
aca |
434 |
Q |
| |
|
||| |
|
|
| T |
26833618 |
aca |
26833620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 41916892 - 41916817
Alignment:
| Q |
254 |
acctctctttcattgtacattgggatctggacaagaaccatgggataataggagtttcccaactcaacatcatcct |
329 |
Q |
| |
|
|||||||||||||||||||| || || || ||||||||||| |||||| | ||||| || ||||||| |||||||| |
|
|
| T |
41916892 |
acctctctttcattgtacataggtatttgaacaagaaccataggataacaagagttccctaactcaatatcatcct |
41916817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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