View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_2_23 (Length: 571)
Name: J5_2_23
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_2_23 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 268 - 537
Target Start/End: Complemental strand, 30593868 - 30593600
Alignment:
| Q |
268 |
attaataaatgcatcagatattttttaaagactttaaaaagtaannnnnnnatagaaattgtgccttgaatgcatcaagtattaaaatttccaataaata |
367 |
Q |
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| T |
30593868 |
attaataaatgcatcagatattttttaaagactttaaaaagtaatttttttatagaaattgtgccttgaatgcatcaagtattaaaatttccaataaata |
30593769 |
T |
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| Q |
368 |
atttgttaattgagaattagcaaaacccaatttcacaagacaagtagacaaccttagatcgcgtaaccactaacaaccatatccggaacaaaataactta |
467 |
Q |
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| T |
30593768 |
atttgttaattgagaattagcaaaacccaatttcacaagacaagtagacaaccttagaccgcgtaaccactaacaaccatatccggaacaaaataactta |
30593669 |
T |
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| Q |
468 |
cgcacgcaggaacgaacaanctgnctctagtttctttcagtttgaagcgacccgtttnaagtcatggagg |
537 |
Q |
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| T |
30593668 |
cgcacgcaggaacgaacaatctgtctctagtttctttcagtttgaagcgactcgttt-aagtcatggagg |
30593600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 134 - 273
Target Start/End: Complemental strand, 30593319 - 30593180
Alignment:
| Q |
134 |
gtgttaatggctttcacagtagttctgtttgcgacgcctgagaatcaattgagcagcgttggggaaggggaggaggatactcacacaagtgattccgcac |
233 |
Q |
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| T |
30593319 |
gtgttaatggctttcacagtagttctgtttgcgacgcctgagaatcaattgagcagcgttggggaaggggaggaggatactcacacaagtgattccgcac |
30593220 |
T |
|
| Q |
234 |
ttcaaggtaactgcttttgttatcaatcaatgacattaat |
273 |
Q |
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| T |
30593219 |
ttcaaggtaactgcttttgttatcaatcaatgacattaat |
30593180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30593452 - 30593393
Alignment:
| Q |
1 |
ctttccgcaccaccactctctctcatcgtccttctccttttcctctatcacctggtactc |
60 |
Q |
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| T |
30593452 |
ctttccgcaccaccactctctctcatcgtccttctccttttcctctatcacctggtactc |
30593393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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