View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_2_26 (Length: 402)
Name: J5_2_26
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_2_26 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 196 - 402
Target Start/End: Original strand, 5246198 - 5246404
Alignment:
| Q |
196 |
ccaaaggggtttattagcaataacatagaaacacgaaactgggttaacttggcccaatactgaggcaggacaagagtccattgttaatcacaccccatat |
295 |
Q |
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| T |
5246198 |
ccaaaggggtttattagcaataacatagaaacacgaaactgggttaacttggcccaatactgaggcaggacaagagtccattgttaatcacaccccatat |
5246297 |
T |
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| Q |
296 |
tttcatacagaaagttgttatttgaacaataaaaatatatcatattttagacatagtttgggcatccccctaatcttatcctagagagacatggtgtgga |
395 |
Q |
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| T |
5246298 |
tttcatacagaaagttgttatttgaacaataaaaatatatcatattttagacatagtttgggcatccccctaatcttatcctagagagacatggtgtgga |
5246397 |
T |
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| Q |
396 |
tgataat |
402 |
Q |
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||||||| |
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| T |
5246398 |
tgataat |
5246404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 5246402 - 5246571
Alignment:
| Q |
3 |
aatctgatatttaaacttggctattaacattctttgtaactcttgattaagagtagtgtgtggtgatacgtgtggacttgaagatttggatacatatctg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5246402 |
aatctgatatttaaacttggctattaacattctttgtaactcttgattaagagtagtgtatggtgatacgtgtggacttgaagatttggatacatatctg |
5246501 |
T |
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| Q |
103 |
attacacacacattcataaaaatgaatatcacataattatttaagaaacactcattatttaattattaat |
172 |
Q |
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| T |
5246502 |
attacacacacattcataaaaatgaatatcacataattatttaagaaacactcattatttaattattaat |
5246571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 3467704 - 3467766
Alignment:
| Q |
109 |
cacacattcataaaaatgaatatcacataattatttaagaaacactcattatttaattattaa |
171 |
Q |
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| T |
3467704 |
cacacattcataaaaatgaatatcacataattaattaaaaaacactcattatttaattattaa |
3467766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 43508894 - 43508841
Alignment:
| Q |
109 |
cacacattcataaaaatgaatatcacataattatttaagaaacactcattattt |
162 |
Q |
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| T |
43508894 |
cacacactcataaaaatgaatatcacataattaattaaaaaacactcattattt |
43508841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 33770396 - 33770447
Alignment:
| Q |
120 |
aaaaatgaatatcacataattatttaagaaacactcattatttaattattaa |
171 |
Q |
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| T |
33770396 |
aaaaatgaatatcacataattatttaaaaaacacccatgatttaattattaa |
33770447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 39069001 - 39068941
Alignment:
| Q |
109 |
cacacattcataaaaatgaatatcacataattatttaagaaacactcattatttaattattaa |
171 |
Q |
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|||||| |||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| |
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| T |
39069001 |
cacacactcataaaaatgaatatcacataattaatta--aaaaactcattatttaattattaa |
39068941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 21850254 - 21850200
Alignment:
| Q |
118 |
ataaaaatgaatatcacataattattt-aagaaacactcattatttaattattaa |
171 |
Q |
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||||||||||||||||||||||||||| || ||| | | |||||||||||||||| |
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| T |
21850254 |
ataaaaatgaatatcacataattatttaaaaaaatatttattatttaattattaa |
21850200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 9398534 - 9398587
Alignment:
| Q |
113 |
cattcataaaaatgaatatcacataattatttaagaaacactcattatttaatt |
166 |
Q |
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|||||||| |||| |||||||||||||||||||| || || |||||| |||||| |
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| T |
9398534 |
cattcatacaaataaatatcacataattatttaaaaagcattcattaattaatt |
9398587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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