View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_2_27 (Length: 610)
Name: J5_2_27
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_2_27 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 115 - 585
Target Start/End: Original strand, 48885506 - 48885974
Alignment:
| Q |
115 |
attaatttgcattttgatctacttgttgattggttcttattgaatcactaatgctgacagtgcatatttgaattggtggtgagttagcgaaatcacagtg |
214 |
Q |
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| T |
48885506 |
attaatttgcattttgatctacttgttgattggttcttattgaatcactaatgctaacagtgcatatttgaattggtggtgagttagcgaaatcacagtg |
48885605 |
T |
|
| Q |
215 |
acactttgattttgttgaagttacaacgtgtaacttttaccaaaatcgtggaggtccatcgtgattttgtctaactctctctgaattcaaacatgcacac |
314 |
Q |
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| T |
48885606 |
acactttgattttgttgaagttacaacgtgtaacttttaccaaaatcgtggaggtccatcgtgattttgtctaactctctctgaattcaaacatgcacac |
48885705 |
T |
|
| Q |
315 |
aattatttaatttggagagaaaaactaaatcattttcacatggaattaacttggttcaaaattggtcgaattaactacacgagcatctgatatcgaagag |
414 |
Q |
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| T |
48885706 |
aattatttaatttggagagaaaaactaaatcattttcacatggaattaacttggttcaaaattggtcgaattaactacacgagcatctgatatcgaagag |
48885805 |
T |
|
| Q |
415 |
acataattttgttgatcatgttacaggtgaaatataaaaaggtagatcaa-nnnnnnnnnnnnctttcaaaatttgactgcccatgccaaattgacaatc |
513 |
Q |
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| T |
48885806 |
acataattttgttgatcatgttacaggtgaaatat-aaaaggtagatcaatttttatttttttctttcaaaatttgactgcccatg-caaattgacaatc |
48885903 |
T |
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| Q |
514 |
attcaagtggtgtgaattttagaagtgtttgccacnctagttcaaatgatgggttcattacnaaatggtttc |
585 |
Q |
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| T |
48885904 |
attcaagtgttgtgaattttagaagtgtttgcaacgctagttcaaatgat-ggttcattacaaaatgttttc |
48885974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 48886392 - 48886511
Alignment:
| Q |
1 |
tgtagcaattgaaatcaggcaatgcactactgcatatttgttgtgcctcatgtttaataacactaacaaactattacacaacgacatcaaactaaagcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48886392 |
tgtagcaattgaaatcaggcaatgcactactgcatatttgttgtgcctcatgtttaataacactaacaaactattacacaacgacatcaaactaaagcac |
48886491 |
T |
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| Q |
101 |
gatcacagtaaaaaattaat |
120 |
Q |
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| T |
48886492 |
aatcacagtaaaaaattaat |
48886511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 563
Target Start/End: Original strand, 50675640 - 50675722
Alignment:
| Q |
480 |
tcaaaatttgactgcccatgccaaattgacaatcattcaagtggtgtgaattttagaagtgtttgccacnctagttcaaatgat |
563 |
Q |
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| T |
50675640 |
tcaaaattttactggccatgc-aaattgatgatcattcaagtgttttgaattttagaagggtgtgcaatgctagttcaaatgat |
50675722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 8091277 - 8091334
Alignment:
| Q |
203 |
gaaatcacagtgacactttgattttgttgaagttacaac-gtgtaacttttaccaaaat |
260 |
Q |
| |
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|||||||| |||||||| |||||||||||||||| |||| ||||||||||| ||||||| |
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| T |
8091277 |
gaaatcacggtgacactgtgattttgttgaagtt-caacggtgtaacttttgccaaaat |
8091334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 12196242 - 12196279
Alignment:
| Q |
119 |
atttgcattttgatctacttgttgattggttcttattg |
156 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||| |
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| T |
12196242 |
atttacattttgatctacttgatgattggttcttattg |
12196279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 12440670 - 12440707
Alignment:
| Q |
119 |
atttgcattttgatctacttgttgattggttcttattg |
156 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||| |
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| T |
12440670 |
atttacattttgatctacttgatgattggttcttattg |
12440707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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