View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_2_4 (Length: 544)
Name: J5_2_4
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_2_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 163 - 544
Target Start/End: Complemental strand, 38486079 - 38485698
Alignment:
| Q |
163 |
attaatgcagttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaaaatgatgacttttgcgagttgataccgtctggaatatctt |
262 |
Q |
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| T |
38486079 |
attaatgcagttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaaaatgatgacttttgcgagttgataccgtctggaatatctt |
38485980 |
T |
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| Q |
263 |
gattcgttggaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagcttgagggccttatagtagtacatcat |
362 |
Q |
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| T |
38485979 |
gattcgttggaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagcttgagggccttatagtagtacatcat |
38485880 |
T |
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| Q |
363 |
tcctctaacagtccgcgatagtgtctggtctctataggatgcccatgacctcaattctcttagtttatctgtccatatctcacggtctttcatcatccct |
462 |
Q |
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| T |
38485879 |
tcctctaacagtccgcgatagtgtctggcctctataggatgcccatgacctcaattctcttagtttatctgtccatatctcacggtctttcatcatcccc |
38485780 |
T |
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| Q |
463 |
tctcgcctcattctctccataaaattcttccattcatcttcatatatagtctgcagatagtatagagttgatatcccatctt |
544 |
Q |
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| T |
38485779 |
tctcgcctcattctctccataaaattcttccattcatcttcatatatagtctgcagatagtatagagttgatatcccatctt |
38485698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 38485702 - 38485535
Alignment:
| Q |
1 |
atcttcattcccagttctgagctgctctttactgtaaaccacttcttcactataataaggggttagaacactgaaagccctcattttctcaacttgagga |
100 |
Q |
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| T |
38485702 |
atcttcattcccagttctgagctgctctttactgtaaaccacttcttcactataataaggggttagaacactgaaagccatcattttctcaacttgagga |
38485603 |
T |
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| Q |
101 |
gcatggggcatcttcataaaaagtgagttactgaagaatgcaattctccgtctagcttctagattaat |
168 |
Q |
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| T |
38485602 |
gcatggggcatcttcataaaaagtgagttactgaagaatgcaattctccgtctagcttctagattaat |
38485535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 30120091 - 30119928
Alignment:
| Q |
2 |
tcttcattcccagttctgagctgctctttactgtaaaccacttcttcactataataaggggttagaacactgaaagccctcattttctcaacttgaggag |
101 |
Q |
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| T |
30120091 |
tcttcattctcagtcctgagctgttctttgctgtataatacttcttcattgtaataaggtgttagaacactgaaagccagcattttctcaacttggggag |
30119992 |
T |
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| Q |
102 |
catggggcatcttcataaaaagtgagttactgaagaatgcaattctccgtctagcttctagatt |
165 |
Q |
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| T |
30119991 |
catggggcatattcataaaaagtgagttgctgaagaaagcaatcctccgtctggcctctagatt |
30119928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 273 - 533
Target Start/End: Complemental strand, 30120359 - 30120099
Alignment:
| Q |
273 |
aacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagcttgagggccttatagtagtacatcattcctctaaca |
372 |
Q |
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| T |
30120359 |
aacaagctcgcgtgagccttctcgaatgtccatttctgatgcagaatccagaaatgtcaacatcttgagggcccgatagtaatacatcattcctctaact |
30120260 |
T |
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| Q |
373 |
gtccgcgatagtgtctggtctctataggatgcccatgacctcaattctcttagtttatctgtccatatctcacggtctttcatcatcccttctcgcctca |
472 |
Q |
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| T |
30120259 |
gtccgcgatagtgtttggcctcggtaggaagcccacagcctcaaatctctaagtttatcagtccacagatcactgtctttcatcatcccctcccgacgca |
30120160 |
T |
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| Q |
473 |
ttctctccataaaattcttccattcatcttcatatatagtctgcagatagtatagagttga |
533 |
Q |
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| T |
30120159 |
tcctctccagaaaattcttccactcatcatcataaatagtctgcaaatagtacagggttga |
30120099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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