View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_2_41 (Length: 199)
Name: J5_2_41
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_2_41 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 23216714 - 23216523
Alignment:
| Q |
1 |
acaagtgacgaatccggagaagacaaagatggagaagattacgtttttattgtgtgcctcggcctttaaggaactgatttgcggttcttgctcaattcct |
100 |
Q |
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| T |
23216714 |
acaagtgacgaatccggagaagacaaagatggagaagattacgtttttattgtgtgcctcggcctttaaggaactgatttgcggttcttgctcaattcct |
23216615 |
T |
|
| Q |
101 |
atcccattgattaatttcgtcagcttatgtcgttacatgttcaattcaccatgtgtttccggcaacagagttgttcttctcgacacacgcta |
192 |
Q |
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| T |
23216614 |
atcccattgattaatttcgtcagcttatgtcgttacatgttcaattcaccatgtgtttccggcaacagagttgttcttctcgacacacgcta |
23216523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 33865978 - 33866169
Alignment:
| Q |
1 |
acaagtgacgaatccggagaagacaaagatggagaagattacgtttttattgtgtgcctcggcctttaaggaactgatttgcggttcttgctcaattcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
33865978 |
acaagtgacgaatccggagaagacaaagatggagtagattacgtttttattgtgtacctcagcctttaaggaactgatttgcgattcttgctcaattcct |
33866077 |
T |
|
| Q |
101 |
atcccattgattaatttcgtcagcttatgtcgttacatgttcaattcaccatgtgtttccggcaacagagttgttcttctcgacacacgcta |
192 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33866078 |
atcccattgattaatttcgtcagcttttgtcgttacatgctcaattcaccatgtgtttccggcaacagagttgttcttctcgacacatgcta |
33866169 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 11075251 - 11075441
Alignment:
| Q |
2 |
caagtgacgaatccggagaagacaaagatggagaagattacgtttttattgtgtgcctcggcctttaaggaactgatttgcggttcttgctcaattccta |
101 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| |
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| T |
11075251 |
caagtgacgaatctggagaagacaaagatggagaagattacgtttttattgtgtgcctcagcctttaaggttctgatttgcggttcttgctcaatttcta |
11075350 |
T |
|
| Q |
102 |
tcccattgattaatttcgtcagcttatgtcgttacatgttcaattcaccatgtgtttccggcaacagagttgttcttctcgacacacgcta |
192 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
11075351 |
tcccattgattaatttcgtcagcttttgtcgttacatgctcaattcaccatgtgtttccggcaacagaattgttcttctcgactcacgcta |
11075441 |
T |
|
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