View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_2_51 (Length: 631)
Name: J5_2_51
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_2_51 |
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Alignment Details
Target: chr2 (Bit Score: 582; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Original strand, 31624616 - 31625226
Alignment:
| Q |
1 |
gttgaatcacttgaataatgggtttatagagaaagaagcatgttacaactaatgatgaaaagtactaaaacacgtaattagcgtttgaatgtcaactttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31624616 |
gttgaatcacttgaataatgggtttatagagaaagaagcatgttacaactaatgatgaaaagtactaaaacacgtaattagcgtttgaatgtcaactttg |
31624715 |
T |
|
| Q |
101 |
aacattttgatggtcaacctatgtgcttgattgaggatgaaaatcattgactaattatttttattttaacttattttatccttaaagaaaaaacagtata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31624716 |
aacattttgatggtcaacctatgtgcttgattgaggatgaaaatcattgactaattatttttattttaacttattttatccttaaagaaaaaacagtata |
31624815 |
T |
|
| Q |
201 |
acttattttgtgtcacaactcacaaatggagtctagaaattggattgcgcggttgactgattgatgatcgttggatcgagattctatgatctaaatttta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31624816 |
acttattttgtgtcacaactcacaaatggagtctagaaattggattgcgtggttgactgattgatgatcgttggatcgagattctatgatctaaatttta |
31624915 |
T |
|
| Q |
301 |
actaaaaattgatgcccttnnnnnnncgaaattttaaatttgaaccgttcgacctcaatccaacaattataattatgttaactatgtaatatattaaatt |
400 |
Q |
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| T |
31624916 |
actaaaaattgatgcccttaaaaaaacgaaattttaaatttgaatcgttcgacctcaatccaacaattataattatgttaactatgtaatatattaaatt |
31625015 |
T |
|
| Q |
401 |
ttttaccaccgacacaatctggagcagtgatatttgttgagattttaaaggagtgtttataaagagattcaagattcaaactctctattttaatcggtta |
500 |
Q |
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| T |
31625016 |
ttttaccaccgacacaatctggagcagtgatatttgttgagattttaaaggagtgtttataaagagattcaagattcaaactctctattttaatcggtta |
31625115 |
T |
|
| Q |
501 |
atccttcccaatccaattagacattaacattttatctataaaaataatattataatgtatgcatagtcaactatgattccatattcgttggagaggaact |
600 |
Q |
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| T |
31625116 |
atccttcccaatccaattagacattaacattttatctataaaaataatattataatgtatgcatagtcaactatgattccatattcgttggagaggaact |
31625215 |
T |
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| Q |
601 |
cggttggaatt |
611 |
Q |
| |
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||||||||||| |
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| T |
31625216 |
cggttggaatt |
31625226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 31605876 - 31605983
Alignment:
| Q |
1 |
gttgaatcacttgaataatgggtttatagagaaagaagcatgttacaactaatgatgaaaagtactaaaacacgtaattagcgtttgaatgtcaactttg |
100 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
31605876 |
gttgaatcacttgaat--tggatttatatagaaagaagcatgttacaactaatgatgaaaagtactaaaacacgtaattagcgtttgaatgttaacttgg |
31605973 |
T |
|
| Q |
101 |
aacattttga |
110 |
Q |
| |
|
|||| ||||| |
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| T |
31605974 |
aacactttga |
31605983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 31609536 - 31609623
Alignment:
| Q |
67 |
aaaacacgtaattagcgtttgaatgtcaactttgaacattttgatggtcaacctatgtgcttgattgaggatgaaaatcattgactaat |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| || |||||||||||||| |
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| T |
31609536 |
aaaacacgtaattagcgtttgaatgtcaactttgaacatttcgatggtcaacctatgtgcttgact-aggaagataatcattgactaat |
31609623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 31614526 - 31614582
Alignment:
| Q |
64 |
actaaaacacgtaattagcgtttgaatgtcaactttgaacattttgatggtcaacct |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
31614526 |
actaaaacacgtaattagcgtttgaatgtcaactttgaacacttcgatggtcaacct |
31614582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 31619658 - 31619735
Alignment:
| Q |
89 |
atgtcaactttgaacattttgatggtcaacctatgtgcttgattgaggatgaaaatcattgactaattatttttattt |
166 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||| |||| | || |||||| ||||||||||||| |||| |
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| T |
31619658 |
atgtcaactttgaacacttcgatggtcaacctatgtgcttgactgagaaagataatcatcgactaattattttaattt |
31619735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 558 - 611
Target Start/End: Original strand, 31619975 - 31620029
Alignment:
| Q |
558 |
tatgcatagtcaactatgattcca-tattcgttggagaggaactcggttggaatt |
611 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
31619975 |
tatgcatagtcaactatgattccaatattcgttggagtggaactcggttggaatt |
31620029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 31609490 - 31609536
Alignment:
| Q |
2 |
ttgaatcacttgaataatgggtttatagagaaagaagcatgttacaa |
48 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
31609490 |
ttgaatcacttgaatgatggatttatagagaaagaagcatgttacaa |
31609536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 518
Target Start/End: Original strand, 31614842 - 31614924
Alignment:
| Q |
431 |
tatttgttgagattttaaaggagtgtttataaagagattcaagattcaaactctctattttaatcggttaatccttcccaatccaatt |
518 |
Q |
| |
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||||||||||||| || |||||| ||| || |||||||||||||||| | |||||||||| |||||||||||||||||||||| |
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| T |
31614842 |
tatttgttgagatgttgaaggagcgtt---aaggagattcaagattcaa--tttctattttaacaagttaatccttcccaatccaatt |
31614924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 611
Target Start/End: Original strand, 31615049 - 31615102
Alignment:
| Q |
559 |
atgcatagtcaactatgattccat-attcgttggagaggaactcggttggaatt |
611 |
Q |
| |
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||||||||||||| ||||||||| ||||||||| |||||| |||||||||||| |
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| T |
31615049 |
atgcatagtcaacaatgattccaagattcgttggggaggaattcggttggaatt |
31615102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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