View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_2_54 (Length: 469)
Name: J5_2_54
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_2_54 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 46793515 - 46793047
Alignment:
| Q |
1 |
gcaatagcattgaagagcaatgttgaacacattttctttcatgaaaatgtcgttttacaaagaattgttcctccaaattctgttgattttctctttgatt |
100 |
Q |
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| T |
46793515 |
gcaatagcattgaagagcaatgttgaacacattttctttcatgaaaatgtcgttttacaaagaattgttcctccaaattctgttgattttctctttgatt |
46793416 |
T |
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| Q |
101 |
gctcttagttcccaaactcgttatcaaacaaagagtcattataattttgttgtgagtcctatcaattcgtgagaattacttaataccctatagcattact |
200 |
Q |
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| T |
46793415 |
gctcttagttcccaaactcgttatcaaacaaagagtcattataattttgttgtgagtcctatcaattcgtgagaattacttaataccctatagcattact |
46793316 |
T |
|
| Q |
201 |
agtaaaacattatgtagcatagtagcttccctcaaataaaaatgtagcatagcatgcaataaccctaattttcattttttaaaatatttccgcaaacctt |
300 |
Q |
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| T |
46793315 |
agtaaaacattatgtagcatagtagcttccctcaaataaaaatgtagcatagcatgcaataaccctaattttcattttttaaaatatttccgcaaacctt |
46793216 |
T |
|
| Q |
301 |
gccctttgagtggagagctagttctatgcggcannnnnnncaccttgaattgttgcatgaaaataactagtatgtaattgaaatacattagtatactttt |
400 |
Q |
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| T |
46793215 |
gccctttgagtggagagctagttctatgcggcatttttttcaccttgaattgttgcatgaaaataactagtatgtaattgaaatacattagtatactttt |
46793116 |
T |
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| Q |
401 |
tgtcacatatatacaatagtatcttaattaattagatcgtatattaacttattaattttgttgcacaat |
469 |
Q |
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| T |
46793115 |
tgtcacatatatacaatagtatcttaattaattagatcgtatattaacttattaattttgttgcacaat |
46793047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 46785121 - 46785037
Alignment:
| Q |
33 |
tttctttcatgaaaatgtcgttttacaaagaattgttcctccaaattctgttgattttctctttgattgctcttagttcccaaactcg |
120 |
Q |
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| T |
46785121 |
tttctttcatgaaaatgtcgttttacaaagaattgt---tccaaactttgttgatttattctttcattactcttagttcccaaactcg |
46785037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 301 - 393
Target Start/End: Complemental strand, 22120086 - 22119994
Alignment:
| Q |
301 |
gccctttgagtggagagctagttctatgcggcannnnnnncaccttgaattgttgcatgaaaataactagtatgtaattgaaatacattagta |
393 |
Q |
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| T |
22120086 |
gccctttgagtggagtgctagttctatgcggcatttttttcaccttgaattgttgcatgaaaataactagtatgtaattgaaatacattagta |
22119994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 22120150 - 22120107
Alignment:
| Q |
254 |
atgcaataaccctaattttcattttttaaaatatttccgcaaac |
297 |
Q |
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| T |
22120150 |
atgccataaccctaattttcattttttaaaatgtttccgaaaac |
22120107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 1655030 - 1655058
Alignment:
| Q |
305 |
tttgagtggagagctagttctatgcggca |
333 |
Q |
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| T |
1655030 |
tttgagtggagagctagttctatgcggca |
1655058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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