View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_2_63 (Length: 642)
Name: J5_2_63
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_2_63 |
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| [»] scaffold0249 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 3291375 - 3290850
Alignment:
| Q |
1 |
aaaccaccctcataaattttctaatatgcacataatgtaaactaaaaagtaaaaactattgttttattcgtcggagnnnnnnnnnnnaccaagattaaga |
100 |
Q |
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| T |
3291375 |
aaaccaccctcataaattttctaatatgcacataatgtaaactaaaaagtaaaaactattgttttattcgtcggagtttttttttttaccaagattaaga |
3291276 |
T |
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| Q |
101 |
ttgataattttactctataacgccactcgttgaaacggttatcttgctgagttggtaaagatggagaatgaagtgatcgtaaaacttgaaaatgtagcta |
200 |
Q |
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| T |
3291275 |
ttgataattttactctataacgccactcgttgaaacggttatcttgctgagttggtaaagatggagaatgaagtgatcgtaaaacttgaaaatgtagcta |
3291176 |
T |
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| Q |
201 |
ttgaacgctcagatcagtcgtattggataaatacaacatttgaaggcaaaagattatcaaatgaactcccttagacgggtctcggatcagtggcgtagcg |
300 |
Q |
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| T |
3291175 |
ttgaacgctcagatcagtcgtattggataaatacaacatttgaaggcaaaagattatcaaatgaactcccttagacgggtctcggatcagtggcgtagcg |
3291076 |
T |
|
| Q |
301 |
acaatatggtgagagtgttcaaatgaactctcttaactnnnnnnnnnnnntgcacatatacccctatttattttgcattttgaaccccttgaatttcttt |
400 |
Q |
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| T |
3291075 |
acaatatggtgagagtgttcaaatgaactctcttaact-aaaaaaaaaaatgcacatatacccctatttattttgcattttgaaccccttgaatttcttt |
3290977 |
T |
|
| Q |
401 |
tccaccattagcccaagaagttcaagaactcaaaattcaaactccctaggtcaaggttttggctatgccactagttcaaacccaaaacttttcgatctat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3290976 |
tccaccattagcccaagaagttcaagaactcaaaattcaaactccctaggtcaaggttttggctatgccactagttcaaacccaaaacttttcgatctat |
3290877 |
T |
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| Q |
501 |
gatctgnctttttacnangggacttca |
527 |
Q |
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|||||| |||||||| | | ||||||| |
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| T |
3290876 |
gatctgtctttttactatgtgacttca |
3290850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 12861350 - 12861412
Alignment:
| Q |
145 |
tgctgagttggtaaagatggagaatgaagtgatcgtaaaacttgaaaatgtagctattgaacg |
207 |
Q |
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| T |
12861350 |
tgctgagttggtaaagatggacaatgaagtaatcgtaaaacttgaaaatgaagctattgaacg |
12861412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 21765 - 21711
Alignment:
| Q |
351 |
tgcacatatacccctatttattttgcattttgaaccccttgaatttcttttccacca |
407 |
Q |
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| T |
21765 |
tgcaaatatacccctatatatttttcattttgaaccc--tgaattttttttccacca |
21711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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