View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_2_94 (Length: 187)
Name: J5_2_94
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_2_94 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 43418139 - 43418325
Alignment:
| Q |
1 |
cttttcctttcctcatcaagtaatatgctctgacacgaagcctgtgggaattgatgcattcatgcatggaggagttagttgaggctgctttctcactaac |
100 |
Q |
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| T |
43418139 |
cttttcctttcctcatcaagtaatatgctctgacacgaagcctgtgggaattgatgcattcatgcatggaggagttagttgaggctgctttctcactaac |
43418238 |
T |
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| Q |
101 |
aagtgacatttatgtgttattcttcttttctggcactggcagcatcaattcttctactcataatcatcatcttcagaaagtatccac |
187 |
Q |
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| T |
43418239 |
aagtgacatttatgtgttattcttcttttctggcactggcagcatcaattcttctactcataatcatcatcttcagaaagtatccac |
43418325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 43406330 - 43406424
Alignment:
| Q |
74 |
gttagttgaggctgctttctcactaacaagtgacatttatgtgttattcttcttttctggcactggcagcatcaattcttctactcataatcatc |
168 |
Q |
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| T |
43406330 |
gttagtcgaggttgttttctcattcacaagtgacatttatgtgttattcttcttttcgggcattggcagcatcaattcttctactcatcatcatc |
43406424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 43403531 - 43403590
Alignment:
| Q |
1 |
cttttcctttcctcatcaagtaatatgctctgacacgaag-cctgtgggaattgatgcat |
59 |
Q |
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| T |
43403531 |
cttttcctttcctcatcaagtaatatgctccgacacgaagccctgtaggaattgatgcat |
43403590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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