View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_3_2 (Length: 561)
Name: J5_3_2
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_3_2 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 1970380 - 1970857
Alignment:
| Q |
18 |
catttcctcagcttcatcataggtaatccatcctcccattctagttctcttcatcaaggaaacctagttgctccattctctgttataatgtcaccattat |
117 |
Q |
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| T |
1970380 |
catttcctcagcttcatcataggtaatccatcctcccattctagttctcttcatcaaggaaacctagttgctccattctctgttataatgtcaccattat |
1970479 |
T |
|
| Q |
118 |
catctggaacaccatcaaatatgcttaaaaaattattaggtgcatgtaacccagggtaattctgataacaatcatgattctcctccataagataatttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1970480 |
catctggaacaccatcaaatatgcttaaaaaattattaggtgcatgtaacccagggtaattctgataacaatcatgattctcctccataagataatttgt |
1970579 |
T |
|
| Q |
218 |
cacnnnnnnncctttattattattatacgcatcatatttgatgtggcgatgcattcgagcaatttgcatgtgccaagcagtccagtcagggcgactccaa |
317 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1970580 |
cactttttttcctttattattattatacgcatcatatttgatgtggcgatgcattcgagcaatttgcatgtgccaagcagtccagtcagggcgactccaa |
1970679 |
T |
|
| Q |
318 |
aggtaaagaggcggcggcttcaggttccagtcttccaattgcttatctcgagtatcgacagaaccaggcagataaaacgactggaggaataaacaaaacg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1970680 |
aggtaaagaggcggcggcttcaggttccagtcttccaattgcttatctcgagtatcgacagaaccaggcagataaaacgactggaggaataaacaaaacg |
1970779 |
T |
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| Q |
418 |
aaagacatatatnagcccttgggttnagtcacacaatccttgggattaaaatcaccgaaattttaaacaaactcacctttcc |
499 |
Q |
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|||||||||||| ||||||| |||| |||||||||||| | |||||||||||| ||||||||| ||||||||||||||||| |
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| T |
1970780 |
aaagacatatataagccctt-ggtttagtcacacaatc--ttggattaaaatcatcgaaatttt-aacaaactcacctttcc |
1970857 |
T |
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