View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_3_39 (Length: 347)
Name: J5_3_39
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_3_39 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 50950945 - 50951291
Alignment:
| Q |
1 |
ggagtcaggtttaagtcactatatgcatctgtgcttgtattcgtttgtcttttataggactggtctagatggtatgttggatgcgtcgttggtatgttgg |
100 |
Q |
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| T |
50950945 |
ggagtcaggtttaagtcactatatgcatctgtgcttgtattcgtttgtcttttataggactggtctagatggtatgttggatgtgtcgttggtatgttgg |
50951044 |
T |
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| Q |
101 |
tagtttgcagcagaatttggaggtggtgcctagttgcttttattgtattggtattggtatgttctgctttagagattgctgactataggcggatatagag |
200 |
Q |
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| T |
50951045 |
tagtttgcagcagaatttggaggtggtgcctagttgcttttattgtattggtattggtatgttctgctttagagattgctgactataggcggatatagag |
50951144 |
T |
|
| Q |
201 |
attgctgacatttttacctaggcattaagaatcgacccattcaaagagaatgatgctaagcattatacacttatatacattggattgaaggagagtgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50951145 |
attgctgacatttttacctaggcattaagaatcgacccattcaaagagaatgatgctaagcattatacacttatatacattggattgaaggagagtgttg |
50951244 |
T |
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| Q |
301 |
tgaatacaattcaatgtattgggttaaacacttgagctttgtatcaa |
347 |
Q |
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| T |
50951245 |
tgaatacaattcaatgtattgggttaaacacttgagctttgtatcaa |
50951291 |
T |
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