View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_3_53 (Length: 236)
Name: J5_3_53
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_3_53 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 33815404 - 33815235
Alignment:
| Q |
12 |
atttgaaaagtgatagtaacattcactctatcattgtctattgaacacattttctcttatgagatcaaatttacatagatcacaccattttgaaaataat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33815404 |
atttgaaaagtgatagtaacattcactctatcattgtctattgaacacattttctcttatgagatcaaatttacatagatcacaccattttgaaaataat |
33815305 |
T |
|
| Q |
112 |
tctacacacaatactaccaaacaaactaatataatatgcttaaaagatccccttttggaaagcaccaatt |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33815304 |
tctacacacaatactaccaaacaaactaatataatatgcttaaaagatccccttttggaaagcaccaatt |
33815235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 33815469 - 33815411
Alignment:
| Q |
178 |
aattctacaagtattttgtgttggtgtaatttgaaatctcagggagcaatgcttgaatt |
236 |
Q |
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| T |
33815469 |
aattctacaagtattttgtgttggtgtaatttgaaatctcagggagcaatgcttgaatt |
33815411 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 43966974 - 43966929
Alignment:
| Q |
119 |
acaatactaccaaacaaactaatataatatgcttaaaagatcccctt |
165 |
Q |
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| T |
43966974 |
acaatactac-aaacaaactaatataatatgcttaaaagatcccctt |
43966929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 40987557 - 40987515
Alignment:
| Q |
119 |
acaatactaccaaacaaactaatataatatgcttaaaagatcc |
161 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
40987557 |
acaatactatcaaacaaactaatagaatatgcttaaaagatcc |
40987515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 27935271 - 27935232
Alignment:
| Q |
121 |
aatactaccaaacaaactaatataatatgcttaaaagatc |
160 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
27935271 |
aatactaccaaacaaattaatataatatgtttaaaagatc |
27935232 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 3236221 - 3236179
Alignment:
| Q |
119 |
acaatactaccaaacaaactaatataatatgcttaaaagatcc |
161 |
Q |
| |
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||||||||| |||||||| ||||| |||||||||||||||||| |
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| T |
3236221 |
acaatactatcaaacaaattaatagaatatgcttaaaagatcc |
3236179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 1518421 - 1518455
Alignment:
| Q |
119 |
acaatactaccaaacaaactaatataatatgctta |
153 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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|
| T |
1518421 |
acaatactaccaaacaaactaatagaatatgctta |
1518455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 28298685 - 28298733
Alignment:
| Q |
119 |
acaatactaccaaacaaactaatataatatgcttaaaagatcccctttt |
167 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||| |||| ||||| |
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| T |
28298685 |
acaatgctaccaaacaaactaatagaatatgcctaaaaaatccactttt |
28298733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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