View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_3_59 (Length: 411)
Name: J5_3_59
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_3_59 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 157 - 411
Target Start/End: Original strand, 8333714 - 8333968
Alignment:
| Q |
157 |
caattgatatttcggagattttaaatggtatccatccaagcttgaacgactcatcaaatggtgcacaacaatccattagtgatgaaactcttgctagact |
256 |
Q |
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| T |
8333714 |
caattgatatttcggagattttaaatggtatccatccaagcttgaacgactcatcaaatggtgcacaacaatccattagtgatgaaactcttgctagact |
8333813 |
T |
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| Q |
257 |
aaatgaatctgttcttttattaaagcaggaaaagcaacaaagtctacaaaaggtgacattttctgatctagatgaaatactgcaaatgaatttatacccg |
356 |
Q |
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| T |
8333814 |
aaatgaatctgttcttttattaaagcaggaaaagcaacaaagtctacaaaaggtgacattttctgatctagatgaaatactgcaaatgaatttatacccg |
8333913 |
T |
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| Q |
357 |
tggttgctgtacgtgtctcactgttgctattgcaagtaatacggctggatcatct |
411 |
Q |
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| T |
8333914 |
tggttgctgtacgtgtctcactgttgctattgcaagtaatacggctggatcatct |
8333968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 8333964 - 8334125
Alignment:
| Q |
1 |
catctcattcgatacatcaaatgatcaccgttaaagctgtaccaacagttatagtttagtgttaaatggttattggtatcctaatcaatttactcatttc |
100 |
Q |
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| T |
8333964 |
catctcattcgatacatcaaatgatcaccgttaaagctgtaccaacagttatagtttagtgttaaatggttattggtatcctaatcaatttactcatttc |
8334063 |
T |
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| Q |
101 |
ttgcatcgaattgcagtagcttttgctacctgtctcttaatttcttgctgatatcacaattg |
162 |
Q |
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| T |
8334064 |
ttgcatcgaattgcagtagcttttgctacctgtctcttaatttcttgctgatatcacaattg |
8334125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 157 - 347
Target Start/End: Complemental strand, 15580819 - 15580628
Alignment:
| Q |
157 |
caattgatatttcggagattttaaatggtatccatccaagcttgaacgactcatcaaatggtgcacaacaatccattagtgatgaaactcttgctagact |
256 |
Q |
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|||||||||||| | ||| |||||| | ||||| |||||| ||| || |||||||||||||||| ||||| ||||||| |||| |||||||||||| | |
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| T |
15580819 |
caattgatatttggaagactttaaacgacatccacccaagcctgagcggttcatcaaatggtgcaccacaatgcattagtaatgacactcttgctagatt |
15580720 |
T |
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| Q |
257 |
aaatgaatctgttcttttattaaagcaggaaaagcaacaaagtctacaaaaggtgacattttctgatctaga-tgaaatactgcaaatgaat |
347 |
Q |
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| T |
15580719 |
aactggggttgttctttcattaaagcaggaaaagcaacaaaggctacaaaaggtgactttttctgatctggattgaactactgcaaatgaat |
15580628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 12049457 - 12049505
Alignment:
| Q |
305 |
aaaggtgacattttctgatctagat-gaaatactgcaaatgaatttatac |
353 |
Q |
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| T |
12049457 |
aaaggtgac-ttttctgatcaagattgaaatactgcaaatgaatttatac |
12049505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 11909546 - 11909398
Alignment:
| Q |
1 |
catctcattcgatacatcaaatgatcaccgttaaagctgtaccaacagttatagtttagtgttaaatggttattggtatcctaatcaatttactcatttc |
100 |
Q |
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| T |
11909546 |
catctcattcgatacatcaaatgatcactgtaaaagatgtaccaatagttatagtttagtgttgaatggatattagtatcctagtcaatttactcattac |
11909447 |
T |
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| Q |
101 |
ttgcatcgaattgcagtagcttttgcta-cctgtctcttaatttcttgc |
148 |
Q |
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| T |
11909446 |
ttgcattgaattgcactagcttttgataccctgtctcttaatttgttgc |
11909398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 41598 - 41538
Alignment:
| Q |
279 |
aagcaggaaaagcaacaaagtctacaaaaggtgacattttctgatctagatgaaatactgca |
340 |
Q |
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| T |
41598 |
aagcaggaaaa-caacaaaggctatgaaaggtgactttttatgatctatatgaaatactgca |
41538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 27445760 - 27445820
Alignment:
| Q |
279 |
aagcaggaaaagcaacaaagtctacaaaaggtgacattttctgatctagatgaaatactgca |
340 |
Q |
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| T |
27445760 |
aagcaggaaaa-caacaaaggctatgaaaggtgactttttatgatctatatgaaatactgca |
27445820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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