View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_3_62 (Length: 286)
Name: J5_3_62
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_3_62 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 92 - 284
Target Start/End: Original strand, 38865318 - 38865510
Alignment:
| Q |
92 |
caattgggtcttgaaagagtaaccttcttgtgtgagattccacaagaagctcatggacgagttgtgaagtaaaggaagtagaagcagcatacattgtttt |
191 |
Q |
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| T |
38865318 |
caattgggtcttgaaagagtaaccttcttgtgtgagattccacaagaagctcatggacgagttgtgaagtaaaggaagtagaagcagcatacattgtttt |
38865417 |
T |
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| Q |
192 |
ttgttggggaactagttgatagttatttaattagagattgagttgttggtatgttatcttagatgaggattatatatagggaagttntnctcg |
284 |
Q |
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| T |
38865418 |
ttgttggggaactagttgatagttatttaattagagattgagttgttggtatgttatcttagatgaggattatatatagggaagttatactcg |
38865510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 38865771 - 38865867
Alignment:
| Q |
1 |
tcttcatgcaagtggttatatcgcaatatatatgttttgtttaagaagacgtggttcctaattaaagcgggcgggataatgtaaatgacaacaattg |
97 |
Q |
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| T |
38865771 |
tcttcatgcaagtggttatatcgcaatatatatgttttgtttaagaagacgtggttcctaattaaagcgggcgggataatgtaaatgacaacaattg |
38865867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 96 - 277
Target Start/End: Original strand, 38841273 - 38841451
Alignment:
| Q |
96 |
tgggtcttgaaagagtaaccttcttgtgtgagattccacaagaagctcatggacgagttgtgaagtaaaggaagtagaagcagcatacattgttttttgt |
195 |
Q |
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| T |
38841273 |
tgggttttgaatgagtaaccttcttatgtgagattccacaagaagctcattgaatatttgtgtagtaaaggaaataga---agcataca-tgttttttct |
38841368 |
T |
|
| Q |
196 |
tggggaactagttgat-agttatttaattagagattgagttgttggtatgttatcttagatgaggattatatatagggaagtt |
277 |
Q |
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| T |
38841369 |
tgaggaagtaattgatgagttagtttattagagcttgagttgtttttatgttatcttagttgaggattatatatagggaagtt |
38841451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 277
Target Start/End: Original strand, 38861891 - 38862068
Alignment:
| Q |
96 |
tgggtcttgaaagagtaaccttcttgtgtgagattccacaagaagctcatggacgagttgtgaagtaaaggaagtagaagcagcatacattgttttttgt |
195 |
Q |
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| T |
38861891 |
tgggttttgaatgagtaaccttcttgtgtgagattccacaagaagttcatggagaagtggtgaagtaaaggaagtaga---agcatacattgttttttgt |
38861987 |
T |
|
| Q |
196 |
tggggaactagttgatagttatttaattagagattgagttgttggtatgt--tatcttagatgaggattatatatagggaagtt |
277 |
Q |
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| T |
38861988 |
tggggaatt--ttatgagttagttaattagagcttgagttgctgttatgttgtatcttag-ttaggggtatatatagggaagtt |
38862068 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 202
Target Start/End: Original strand, 38827484 - 38827591
Alignment:
| Q |
92 |
caattgggtcttgaaagagtaaccttcttgtgtgagattccacaagaagctcatggacgagttgtgaagtaaaggaagtagaagcagcatacattgtttt |
191 |
Q |
| |
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||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| |
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| T |
38827484 |
caattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaagtaaaagaagtaga---agcatacattgtttt |
38827580 |
T |
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| Q |
192 |
ttgttggggaa |
202 |
Q |
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| T |
38827581 |
ctgttggggaa |
38827591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 38847066 - 38847169
Alignment:
| Q |
96 |
tgggtcttgaaagagtaaccttcttgtgtgagattccacaagaagctcatggacgagttgtgaagtaaaggaagtagaagcagcatacattgttttttgt |
195 |
Q |
| |
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||||| ||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| ||| |
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| T |
38847066 |
tgggttttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaagtaaaagaagtaga---agcatacattgttttctgt |
38847162 |
T |
|
| Q |
196 |
tggggaa |
202 |
Q |
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||||||| |
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| T |
38847163 |
tggggaa |
38847169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 38850659 - 38850576
Alignment:
| Q |
92 |
caattgggtcttgaaagagtaaccttcttgtgtgagattccacaagaagctcatggacgagttgtgaagtaaaggaagtagaag |
175 |
Q |
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| T |
38850659 |
caattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaagttaaggaagtagaag |
38850576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 38859008 - 38859089
Alignment:
| Q |
96 |
tgggtcttgaaagagtaaccttcttgtgtgagattccacaagaagctcatggacgagttgtgaagtaaaggaagtagaagca |
177 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||| |
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| T |
38859008 |
tgggttttgaatgagtaaccttcttgtgtgagattccacaagaagctcatgtagaagtggtgaagtaaaagaagtagaagca |
38859089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 38862383 - 38862444
Alignment:
| Q |
3 |
ttcatgcaagtggttatatcgcaatatatatgttttgtttaagaagacgtggttcctaattaaagc |
68 |
Q |
| |
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|||||||||||||||| |||| ||||||| || |||||||||| ||||| ||||||||||||| |
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| T |
38862383 |
ttcatgcaagtggttagatcgtaatatatttg----gtttaagaagtcgtggctcctaattaaagc |
38862444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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