View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_3_63 (Length: 149)
Name: J5_3_63
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_3_63 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 5e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 3254515 - 3254663
Alignment:
| Q |
1 |
gaatcacataaaaatctgaaagaactaacaataacagaaggaacaaggcaactcaaaatggatgcttatggaaaatatcaaaacctcaagaaaaaacatc |
100 |
Q |
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| T |
3254515 |
gaatcacataaaaatctgaaagaactaacaataacagaaggaacaaggcaactcaaaatggatgcttatggaaaatatcaaaacctcaagaaaaaacatc |
3254614 |
T |
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| Q |
101 |
ttcaccatgaagtttattaaataatatcttgcctacacagaatcaaaac |
149 |
Q |
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| T |
3254615 |
ttcaccatgaagtttattaaataatatcttgcctacacagaatcaaaac |
3254663 |
T |
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