View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_3_76 (Length: 552)
Name: J5_3_76
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_3_76 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 38865775 - 38865318
Alignment:
| Q |
1 |
gaagattgtacttaaacaaatatttcatatggcaaaaagtattatttacggatccaattatattctaataagatttatctagctaggtgagtgggcggcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38865775 |
gaagattgtacttaaacaaatatttcatatggcaaaaagtattatttacggatccaattatattctaataagatttatctagctaggtgagtgggcggcc |
38865676 |
T |
|
| Q |
101 |
ataatatatttatatacacataaaggaattatgcatcaagacgagagctaaacttgtagtgcattcacatagtaactgatttaatttaaagtacctaggc |
200 |
Q |
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| T |
38865675 |
ataatatatttatatacacataaaggaattatgcatcaagacgagagctaaacttgtagtgcattcacatagtaactgatttaatttaaagtacctaggc |
38865576 |
T |
|
| Q |
201 |
acattataatactagttaatttgaaactttaaataaaagcaagataccatatcctaccatacatacgagtataacttccctatatataatcctcatctaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38865575 |
acattataatactagttaatttgaaactttaaataaaagcaagataccatatcctaccatacatacgagtataacttccctatatataatcctcatctaa |
38865476 |
T |
|
| Q |
301 |
gataacataccaacaactcaatctctaattaaataactatcaactagttccccaacaaaaaacaatgtatgctgctcctacttcctttacttcacaactc |
400 |
Q |
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| T |
38865475 |
gataacataccaacaactcaatctctaattaaataactatcaactagttccccaacaaaaaacaatgtatgctgcttctacttcctttacttcacaactc |
38865376 |
T |
|
| Q |
401 |
gtccatgagcttcttgtggaatctcacacaagaagggtactctttcaagacccaattg |
458 |
Q |
| |
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|
| T |
38865375 |
gtccatgagcttcttgtggaatctcacacaagaaggttactctttcaagacccaattg |
38865318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 213 - 454
Target Start/End: Complemental strand, 38841505 - 38841273
Alignment:
| Q |
213 |
tagttaatttgaaactttaaataaaagcaagataccatatcctaccata-catacgagtataacttccctatatataatcctcatctaagataacatacc |
311 |
Q |
| |
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||||||| || ||||||| |||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
38841505 |
tagttaaattcaaacttttaataaa-gcaagataccatatcctacaatatcata------taacttccctatatataatcctcaactaagataacataaa |
38841413 |
T |
|
| Q |
312 |
aacaactcaatctctaattaaataact-atcaactagttccccaacaaaaaacaatgtatgctgctcctacttcctttacttcacaactcgtccatgagc |
410 |
Q |
| |
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|||||||||| ||||||| || ||||| ||||| || |||| ||| ||||||| ||||| |||| ||| |||||||||| ||||| | || |||||| |
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| T |
38841412 |
aacaactcaagctctaataaactaactcatcaattacttcctcaagaaaaaac-atgta---tgcttctatttcctttactacacaaatattcaatgagc |
38841317 |
T |
|
| Q |
411 |
ttcttgtggaatctcacacaagaagggtactctttcaagaccca |
454 |
Q |
| |
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| T |
38841316 |
ttcttgtggaatctcacataagaaggttactcattcaaaaccca |
38841273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 273 - 454
Target Start/End: Complemental strand, 38862068 - 38861891
Alignment:
| Q |
273 |
aacttccctatatataatcctcatctaagata--acataccaacaactcaatctctaattaaataactatcaactagttccccaacaaaaaacaatgtat |
370 |
Q |
| |
|
|||||||||||||||| ||| | |||||||| ||||| || |||||||| |||||||||| ||||| || | ||||||||||||||||||||||| |
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| T |
38862068 |
aacttccctatatatacccctaa-ctaagatacaacataacagcaactcaagctctaattaactaactcataa--aattccccaacaaaaaacaatgtat |
38861972 |
T |
|
| Q |
371 |
gctgctcctacttcctttacttcacaactcgtccatgagcttcttgtggaatctcacacaagaagggtactctttcaagaccca |
454 |
Q |
| |
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||| || |||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
38861971 |
gcttct---acttcctttacttcaccacttctccatgaacttcttgtggaatctcacacaagaaggttactcattcaaaaccca |
38861891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 453 - 527
Target Start/End: Complemental strand, 38865867 - 38865794
Alignment:
| Q |
453 |
caattggtgtcatttacattatcccgcccgcttttaattaggaaccncgtcttcttaaacaaaacatatatattg |
527 |
Q |
| |
|
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| T |
38865867 |
caattgttgtcatttacattatcccgcccgcttt-aattaggaaccacgtcttcttaaacaaaacatatatattg |
38865794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 348 - 458
Target Start/End: Complemental strand, 38827591 - 38827484
Alignment:
| Q |
348 |
ttccccaacaaaaaacaatgtatgctgctcctacttcctttacttcacaactcgtccatgagcttcttgtggaatctcacacaagaagggtactctttca |
447 |
Q |
| |
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|||||||||| ||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||| || |
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| T |
38827591 |
ttccccaacagaaaacaatgtatgcttct---acttcttttacttcacaactcctccatgagcttcttgtagaatcacacacaagaaggttactcttcca |
38827495 |
T |
|
| Q |
448 |
agacccaattg |
458 |
Q |
| |
|
| | ||||||| |
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|
| T |
38827494 |
aaatccaattg |
38827484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 348 - 454
Target Start/End: Complemental strand, 38847169 - 38847066
Alignment:
| Q |
348 |
ttccccaacaaaaaacaatgtatgctgctcctacttcctttacttcacaactcgtccatgagcttcttgtggaatctcacacaagaagggtactctttca |
447 |
Q |
| |
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|||||||||| ||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||| || |
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| T |
38847169 |
ttccccaacagaaaacaatgtatgcttct---acttcttttacttcacaactcctccatgagcttcttgtagaatcacacacaagaaggttactcttcca |
38847073 |
T |
|
| Q |
448 |
agaccca |
454 |
Q |
| |
|
| ||||| |
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|
| T |
38847072 |
aaaccca |
38847066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 378 - 458
Target Start/End: Original strand, 38850579 - 38850659
Alignment:
| Q |
378 |
ctacttcctttacttcacaactcgtccatgagcttcttgtggaatctcacacaagaagggtactctttcaagacccaattg |
458 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||| ||| | ||||||| |
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|
| T |
38850579 |
ctacttccttaacttcacaactcctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattg |
38850659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 373 - 454
Target Start/End: Complemental strand, 38859089 - 38859008
Alignment:
| Q |
373 |
tgctcctacttcctttacttcacaactcgtccatgagcttcttgtggaatctcacacaagaagggtactctttcaagaccca |
454 |
Q |
| |
|
|||| ||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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|
| T |
38859089 |
tgcttctacttcttttacttcaccacttctacatgagcttcttgtggaatctcacacaagaaggttactcattcaaaaccca |
38859008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 38850413 - 38850465
Alignment:
| Q |
203 |
attataatactagttaatttgaaactttaaataaaagcaagataccatatccta |
256 |
Q |
| |
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|
| T |
38850413 |
attataataatagttaaattcaaactttaa-taaaagcaagataccatatccta |
38850465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 38862372 - 38862323
Alignment:
| Q |
14 |
aaacaaatatttcatatggcaaaaagtattatttacggatccaattatat |
63 |
Q |
| |
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||||||||||||||||| |||||| | ||| |||||||||||||||||| |
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|
| T |
38862372 |
aaacaaatatttcatatagcaaaagggatttgttacggatccaattatat |
38862323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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