View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_3_82 (Length: 179)
Name: J5_3_82
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_3_82 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 43005974 - 43006153
Alignment:
| Q |
1 |
aaaaagcagccaagaacatcctgctagcaaagcacccaacttcaccacttgtatgtatttcttattattttcatctacttgcaa-cttgtttgaannnnn |
99 |
Q |
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| T |
43005974 |
aaaaagcagccaagaacatcctgctagcaaagcacccaacttcaccacttgtatgtatttcttattattttcatctacttgcaaccttgtttgaattttt |
43006073 |
T |
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| Q |
100 |
nngttatgattttcaattcctacctggattggcatctaaaaactatgacccatttagaagattgttgtgtatgcatttga |
179 |
Q |
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| T |
43006074 |
ttgttatgattttcaattcctacctggattggcatctaaaaactatgacccatttagaagattgttgtgtatgcatttga |
43006153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 42997740 - 42997805
Alignment:
| Q |
106 |
tgattttcaattcctacctggattggcatctaaaaactatgacccatttagaagattgttgtgtat |
171 |
Q |
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| T |
42997740 |
tgattttcaattactgccttgattggcatctacaaactattctccatttagaagattgttgcgtat |
42997805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 19314531 - 19314624
Alignment:
| Q |
49 |
ttgtatgtatttcttattattttcatctacttgcaactt-gtttgaannnnnnngttatgattttcaattcctacctggattggcatctaaaaa |
141 |
Q |
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|||| |||||||||||||||||||| | |||||||||| ||||||| | ||||||| |||| ||||||||||||||||||||||| |
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| T |
19314531 |
ttgtgtgtatttcttattattttcagatgcttgcaactttgtttgaatttttttctcgtgatttttaattactacctggattggcatctaaaaa |
19314624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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