View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_4_19 (Length: 573)
Name: J5_4_19
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_4_19 |
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| [»] scaffold0381 (2 HSPs) |
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Alignment Details
Target: scaffold0381 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: scaffold0381
Description:
Target: scaffold0381; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 4160 - 3806
Alignment:
| Q |
1 |
gaaaccctaggagagaaaacaatataatgttcaaatcgaaattgtcatcttctgtacctggaaatcgaacagtagaagtaaacaatgcaggtggaaacga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4160 |
gaaaccctaggagagaaaacaatataatgttcaaatcgaaattgtcatcttctgtacctggaaatcgaacagtagaagtaaacaatgcaggtggaaacga |
4061 |
T |
|
| Q |
101 |
aataggagagtgatcggagaagcaccgtaactctaaagctcactctgatcacaatacacttaaatcagagcttattatatcatttgttatgttgcagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4060 |
aataggagagtgatcggagaagcaccgtaactctaaagctcactctgatcacaatacacttaaatcagagcttattatatcatttgttatgttgcagttt |
3961 |
T |
|
| Q |
201 |
taatgatttgtatatatttgttttttctatgtagttttaaagtacaatggctaactcaggaactatttgatactatcaaacattatgtgtaatttggaca |
300 |
Q |
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| T |
3960 |
taatgatttgtatatatttgttttttctatgtagttttaaggtacaatggctaactcaggaactatttgatactatcaaacattatgtgtaatttggaca |
3861 |
T |
|
| Q |
301 |
tccttatttgcatgattttgtgccaatttcagtatcataaaataaattcattaat |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3860 |
tccttatttgcatgattttgtgccaatttcagtatcataaaataaattcattaat |
3806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0381; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 350 - 483
Target Start/End: Complemental strand, 4348 - 4216
Alignment:
| Q |
350 |
attaatcaatcggtgatgtaatcataattcttgtgcagccaacaactacagggaaaaggtgggtttagatatagcaacctagccagccctgccacatgga |
449 |
Q |
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| T |
4348 |
attaatcaatcggtgatgtaatcataattcttgtgcagccaacaactacagggaaaaggtgagtttagatatagcaacctagccagccatgccacatgga |
4249 |
T |
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| Q |
450 |
gatatccctcctgnaatagagnacaaaaacgatc |
483 |
Q |
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| T |
4248 |
gatatccatcatg-aatagagaacaaaaacgatc |
4216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 27015623 - 27015977
Alignment:
| Q |
1 |
gaaaccctaggagagaaaacaatataatgttcaaatcgaaattgtcatcttctgtacctggaaatcgaacagtagaagtaaacaatgcaggtggaaacga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27015623 |
gaaaccctaggagagaaaacaatataatgttcaaatcgaaattgtcatcttctgtacctggaaatcgaacagtagaagtaaacaatgcaggtggaaacga |
27015722 |
T |
|
| Q |
101 |
aataggagagtgatcggagaagcaccgtaactctaaagctcactctgatcacaatacacttaaatcagagcttattatatcatttgttatgttgcagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27015723 |
aataggagagtgatcggagaagcaccgtaactctaaagctcactctgatcacaatacacttaaatcagagcttattatatcatttgttatgttgcagttt |
27015822 |
T |
|
| Q |
201 |
taatgatttgtatatatttgttttttctatgtagttttaaagtacaatggctaactcaggaactatttgatactatcaaacattatgtgtaatttggaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27015823 |
taatgatttgtatatatttgttttttctatgtagttttaaggtacaatggctaactcaggaactatttgatactatcaaacattatgtgtaatttggaca |
27015922 |
T |
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| Q |
301 |
tccttatttgcatgattttgtgccaatttcagtatcataaaataaattcattaat |
355 |
Q |
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| T |
27015923 |
tccttatttgcatgattttgtgccaatttcagtatcataaaataaattcattaat |
27015977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 350 - 483
Target Start/End: Original strand, 27015435 - 27015567
Alignment:
| Q |
350 |
attaatcaatcggtgatgtaatcataattcttgtgcagccaacaactacagggaaaaggtgggtttagatatagcaacctagccagccctgccacatgga |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
27015435 |
attaatcaatcggtgatgtaatcataattcttgtgcagccaacaactacagggaaaaggtgagtttagatatagcaacctagccagccatgccacatgga |
27015534 |
T |
|
| Q |
450 |
gatatccctcctgnaatagagnacaaaaacgatc |
483 |
Q |
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| T |
27015535 |
gatatccatcatg-aatagagaacaaaaacgatc |
27015567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 20771638 - 20771753
Alignment:
| Q |
169 |
agcttattatatcatttgttatgttgcagttttaatgatttgtatatatttgttttttctatgtagttttaaagtacaatggctaactcaggaactattt |
268 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||| |
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| T |
20771638 |
agcttattatatcttttgtcatgttgcagttttaatgatttgtata--tttgttttttctatgtagttttaaggtagaatgactaactcaggaactattt |
20771735 |
T |
|
| Q |
269 |
gatactatcaaacattat |
286 |
Q |
| |
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|||||||||||||||||| |
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| T |
20771736 |
gatactatcaaacattat |
20771753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 354 - 477
Target Start/End: Original strand, 12530535 - 12530661
Alignment:
| Q |
354 |
atcaatcggtgatgtaatcataattctt-gtgcagccaacaactacagggaaaaggtgggtttagatatagc---aacctagccagccctgccacatgga |
449 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||| || |||||||||||| ||||||||||||| ||||| ||| || ||||||||||| |
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| T |
12530535 |
atcaatcggtgatgtaatcataattctttgtgtagccaacaattaaagggaaaaggtgagtttagatatagcaaaaacctgaccaaccatgccacatgga |
12530634 |
T |
|
| Q |
450 |
gatatccctcctgnaatagagnacaaaa |
477 |
Q |
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||||||| || || ||||||| |||||| |
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| T |
12530635 |
gatatccatcatg-aatagagaacaaaa |
12530661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 11769535 - 11769476
Alignment:
| Q |
69 |
acagtagaagtaaacaatgcaggtggaaacgaaataggagagtgatcggagaagcaccgt |
128 |
Q |
| |
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||||||||||||||||||||||||| || || ||| ||| | |||||||||||||||||| |
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| T |
11769535 |
acagtagaagtaaacaatgcaggtgaaaccggaatcggaaattgatcggagaagcaccgt |
11769476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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