View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_4_2 (Length: 83)
Name: J5_4_2
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_4_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 54; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 13476451 - 13476398
Alignment:
| Q |
30 |
aattaataaacagcagattgagcaagaacagtacaagtcctttaaaagtcttgt |
83 |
Q |
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| T |
13476451 |
aattaataaacagcagattgagcaagaacagtacaagtcctttaaaagtcttgt |
13476398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 13476402 - 13476367
Alignment:
| Q |
1 |
cttgttcagctgcaatgggaaggttgatcaattaat |
36 |
Q |
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| T |
13476402 |
cttgttcagctgcaatgggaaagttgatcaattaat |
13476367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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