View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_4_22 (Length: 622)
Name: J5_4_22
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_4_22 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 128 - 425
Target Start/End: Complemental strand, 31258788 - 31258493
Alignment:
| Q |
128 |
cttcttcgtgctgaccttttgggttttgttgtcccagccgacattgtacacttgtttcctttttcatataaattggcatatattgatttaaaaaccgtca |
227 |
Q |
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| T |
31258788 |
cttcttcgtgctgaccttttgggttttgttgtcccagccgacattgtacacttgtttcctttttcatataaattggcatatattgatttaaaaaccgtca |
31258689 |
T |
|
| Q |
228 |
agagttgacgtggtggtgtgtgtattggaacttaataaggagtatgcttatctcgaggttcgatgtttgaatttgataacaaattcntctgtttgatcga |
327 |
Q |
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| T |
31258688 |
agagttgacgtggtggtgtgtgtattggaacttaataaggagtatgcttatctcgaggttcgatgtttgaatttgataac-aattcatctgtttgatcga |
31258590 |
T |
|
| Q |
328 |
tctatacatgtcttttctctcccttcaaataggtttcctttaanaatgtaatatttaaaaagaanggnatgagacctttttatnataatgtatttacc |
425 |
Q |
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| T |
31258589 |
tctatacatgtcttttctctcccttcaaataggtttcctttaagaatgtaatatttaaaaagaagggtatgaga-ctttttataataatgtatttacc |
31258493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 139 - 309
Target Start/End: Complemental strand, 31257716 - 31257546
Alignment:
| Q |
139 |
tgaccttttgggttttgttgtcccagccgacattgtacacttgtttcctttttcatataaattggcatatattgatttaaaaaccgtcaagagttgacgt |
238 |
Q |
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| T |
31257716 |
tgaccttttgggttttgctgtcccatccaactttatacactcgttttctctttcatataaataggcatatattaatttaaaacctgtcatgaattgacat |
31257617 |
T |
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| Q |
239 |
ggtggtgtgtgtattggaacttaataaggagtatgcttatctcgaggttcgatgtttgaatttgataacaa |
309 |
Q |
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| T |
31257616 |
ggtagtgtgtgtattggaacttaatgaggattgtgcttatctcgaggttctatgtttaaatctgataacaa |
31257546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 245 - 365
Target Start/End: Complemental strand, 31259748 - 31259629
Alignment:
| Q |
245 |
gtgtgtattggaacttaataaggagtatgcttatctcgaggttcgatgtttgaatttgataacaaattcntctgtttgatcgatctatacatgtcttttc |
344 |
Q |
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| T |
31259748 |
gtgtgtattgaaacttaatgaggagtgtgcttatctcgaggttccatgtttgaatttgatga-aaaatcatgtgatggatcggtctatacatggcttttc |
31259650 |
T |
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| Q |
345 |
tctcccttcaaataggtttcc |
365 |
Q |
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| T |
31259649 |
tctccctttaaataggtttcc |
31259629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 143 - 309
Target Start/End: Complemental strand, 31258254 - 31258088
Alignment:
| Q |
143 |
cttttgggttttgttgtcccagccgacattgtacacttgtttcctttttcatataaattggcatatattgatttaaaaaccgtcaagagttgacgtggtg |
242 |
Q |
| |
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| T |
31258254 |
cttttgggttttgttg-ctcacccaactttgtacactcattttctatttcatataaataggcatatattaattcaaacaccgtcaagtgttgaagtagca |
31258156 |
T |
|
| Q |
243 |
gtgtgtgtattggaacttaataaggagtatgc-ttatctcgaggttcgatgtttgaatttgataacaa |
309 |
Q |
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| T |
31258155 |
gtgtgtgtattggaacttaatgaggagtgtgctttttctcgaggcttcatctttgaatctgataacaa |
31258088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31258915 - 31258867
Alignment:
| Q |
1 |
ggttcatggtccatttgagatgggtttttggttgaattgcatgtgctgc |
49 |
Q |
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| T |
31258915 |
ggttcatggtccatttgagatgggtttttggttgaattgcatgtgctgc |
31258867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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