View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_4_31 (Length: 488)
Name: J5_4_31
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_4_31 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 44 - 398
Target Start/End: Complemental strand, 3375117 - 3374763
Alignment:
| Q |
44 |
attaataccaactgagttaagctcannnnnnnnnnattaacatggttatgatttattgaatttgtaggacgttcatttatacatgcaaatgctgataagc |
143 |
Q |
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| T |
3375117 |
attaataccaactgagttaagctcattttttttttattaacatggttatgatttattgaatttgtaggacgttcatttatacatgcaaatgctgataagc |
3375018 |
T |
|
| Q |
144 |
tgctgaatgaagtgaaagacgattgccctcgttggttagctattgttcttcctgctatgattgaacttgctgatgaaatcatgggtttagatgtgctctt |
243 |
Q |
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| T |
3375017 |
tgctgaatgaagtgaaagacgattgccctcgttggttagctattgttcttcctgctatgattgaacttgctgatgaaatcatgggtttagatgtgctctt |
3374918 |
T |
|
| Q |
244 |
cacaaagtcatcaagggacaccatgtcctacattgctaaccgtcggaaaagttttcttaacaagtatatatacttatactttattttannnnnnngaggg |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3374917 |
cacaaagtcatcaagggacaccatgtcctacattgctaaccgtcggaaaagttttcttaacaagtatatatacttatactttattttatttttttgaggg |
3374818 |
T |
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| Q |
344 |
aaagtatacttacatttatttaatgcattacataaaacaatttcattgcatgtgt |
398 |
Q |
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| T |
3374817 |
aaagtatacttacatttatttaatgcattacataaaacaatttcattgcatgtgt |
3374763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 79 - 398
Target Start/End: Complemental strand, 3349677 - 3349358
Alignment:
| Q |
79 |
attaacatggttatgatttattgaatttgtaggacgttcatttatacatgcaaatgctgataagctgctgaatgaagtgaaagacgattgccctcgttgg |
178 |
Q |
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| T |
3349677 |
attaacatggttatgatttattgaatttgtaggacgttcatttatacatgcaaatgctgataagctgctgaatgaagtgaaagacgattgccctcgttgg |
3349578 |
T |
|
| Q |
179 |
ttagctattgttcttcctgctatgattgaacttgctgatgaaatcatgggtttagatgtgctcttcacaaagtcatcaagggacaccatgtcctacattg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3349577 |
ttagctattgttcttcctgctatgattgaacttgctgatgaaatcatgggtttagatgtgctcttcacaaagtcatcaagggacaccatgtcctacattg |
3349478 |
T |
|
| Q |
279 |
ctaaccgtcggaaaagttttcttaacaagtatatatacttatactttattttannnnnnngagggaaagtatacttacatttatttaatgcattacataa |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3349477 |
ctaaccgtcggaaaagttttcttaacaagtatatatacttatactttattttatttttttgagggaaagtatacttacatttatttaatgcattacataa |
3349378 |
T |
|
| Q |
379 |
aacaatttcattgcatgtgt |
398 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
3349377 |
aacaatttcattgcatgtgt |
3349358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3349362 - 3349314
Alignment:
| Q |
1 |
tgtgtagggaggaagttgttggggattttgattggtaccctccattaat |
49 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3349362 |
tgtgtagggaggaagttgttggggattttgattggtaccctccattaat |
3349314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3374767 - 3374719
Alignment:
| Q |
1 |
tgtgtagggaggaagttgttggggattttgattggtaccctccattaat |
49 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3374767 |
tgtgtagggaggaagttgttggggattttgattggtaccctccattaat |
3374719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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