View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_4_41 (Length: 312)
Name: J5_4_41
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_4_41 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 34516193 - 34515995
Alignment:
| Q |
1 |
tgcatgaatcatacaagacaatgattcccacatgtttagactcaatgaatcacccacaaacattatctttttacccttccacctattcaagaaatcctct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34516193 |
tgcatgaatcatacaagacaatgattcccacatgtttagactcaatgaatcacccacaaacattatctttttacccttccacctattcaagaaatcctct |
34516094 |
T |
|
| Q |
101 |
ccattgaacctacaccacaaaaataatttactcattacatttgcactatacattaggagaagaaatttagtacactaattacattacaaaatattaatc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34516093 |
ccattgaacctacaccacaaaaataatttactcattacatttgcactatacattaggagaagaaatttagtacactaattacattacaaaatattaatc |
34515995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 34506062 - 34505869
Alignment:
| Q |
2 |
gcatgaatcatacaagacaatgattcccacatgtttagactcaatgaatcacccacaaacattatctttttacccttccacctattcaagaaatcctctc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
34506062 |
gcatgaatcatacaagacaatgattcccacatgtttagactcaatgaatcacccacaaacattatcttcttatccttccacctattcaagaaatcctctc |
34505963 |
T |
|
| Q |
102 |
cattgaac---ctacaccacaaaaataatttactcattacatttgcact-atacattaggagaagaaatttagtacactaattacattacaaaat |
192 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||| ||||||| ||| ||||||||||||| |||||||||| |
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| T |
34505962 |
cattgaacctgctacaccacaaaaataa-ttactcattacatttgtactaatacattatgagaagatattaagtacactaattatattacaaaat |
34505869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 188 - 312
Target Start/End: Complemental strand, 34516313 - 34516189
Alignment:
| Q |
188 |
aaaatattaatcattgcatttgaaacaagagagaaagacaacaagaacaactattacctggaaaatcacagtagacactgattctttcctagaaaagctt |
287 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34516313 |
aaaaaattaatcattgcatttgaaacaagagagaaagacaacaagaacaactattacctggaaaatcacagtagacactgattctttcctagaaaagctt |
34516214 |
T |
|
| Q |
288 |
gtagtggcatttggtaccgatgcat |
312 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
34516213 |
gtagtggcatttggtaccgatgcat |
34516189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 34506135 - 34506059
Alignment:
| Q |
236 |
aactattacctggaaaatcacagtagacactgattctttcctagaaaagcttgtagtggcatttggtaccgatgcat |
312 |
Q |
| |
|
|||||||||| |||| | |||||||||| || ||||||||||||||||||||||||| |||| || ||||| |||| |
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|
| T |
34506135 |
aactattacccggaagaagacagtagacattggttctttcctagaaaagcttgtagtgacattcggaaccgacgcat |
34506059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 4690051 - 4690130
Alignment:
| Q |
2 |
gcatgaatcatacaagacaatgattcccacatgtttagactcaatgaatcacccacaaacattatctttttacccttcca |
81 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||| |
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|
| T |
4690051 |
gcatgaatcatacacgacagtgattcccacatgttcagactcagtgaatcacccacaaacattatcttcttacccctcca |
4690130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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