View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_4_49 (Length: 257)
Name: J5_4_49
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_4_49 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 18015516 - 18015260
Alignment:
| Q |
1 |
aggtgtgtgatgaaaattgtcagggctagctcttgtagtgtatttttattgggattttattacataaaaacttccatatgagaaaagggttagtattatt |
100 |
Q |
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| T |
18015516 |
aggtgtgtgatgaaaattgtcagggctagctcttgtagtgtatttttattgggattttattacataaaaacttccatatgagaaaagggttagtattatt |
18015417 |
T |
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| Q |
101 |
aattatgtaagaaagacaaatgccaattttcctcacttgtaacgtaatcctcacgcagggcacattgacattgactttgacttttagtgttgattgatta |
200 |
Q |
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| T |
18015416 |
aattatgtaagaaagacaaatgccaattttcctcacttgtaacgtaatcctcacgcagggcacattgacattgactttgacttttagtgttgattgatta |
18015317 |
T |
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| Q |
201 |
agaaattgttgnnnnnnncttgttcattgatatggtctattgagtcaaatgatcttg |
257 |
Q |
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| T |
18015316 |
agaaattgttgtttttttcttgttcattgatatggtctattgagtcaaatgatcttg |
18015260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 3063804 - 3064060
Alignment:
| Q |
1 |
aggtgtgtgatgaaaattgtcagggctagctcttgtagtgtatttttattgggattttattacataaaaacttccatatgagaaaagggttagtattatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063804 |
aggtgtgtgatgaaaattgtcagggctagctcttgtagtgtatttttattgggattttattacataaaaacttccatatgagaaaagggttagtattatt |
3063903 |
T |
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| Q |
101 |
aattatgtaagaaagacaaatgccaattttcctcacttgtaacgtaatcctcacgcagggcacattgacattgactttgacttttagtgttgattgatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063904 |
aattatgtaagaaagacaaatgccaattttcctcacttgtaacgtaatcctcacgcagggcacattgacattgactttgacttttagtgttgattgatta |
3064003 |
T |
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| Q |
201 |
agaaattgttgnnnnnnncttgttcattgatatggtctattgagtcaaatgatcttg |
257 |
Q |
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| T |
3064004 |
agaaattgttgtttttttcttgttcattgatatggtctattgagtcaaatgatcttg |
3064060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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