View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_4_57 (Length: 93)
Name: J5_4_57
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_4_57 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 7e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 7e-46
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 40012772 - 40012864
Alignment:
| Q |
1 |
ctactgttcataaattttttagtttctatctcttattccagttggcattcttcaatggattacaataatccttgttgtcgttgcctcagctag |
93 |
Q |
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| T |
40012772 |
ctactgttcataaattttttagtttctatctcttattccagttggcattcttcaatggattacaataatccttgttgtcgttgcctcagctag |
40012864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 9e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 9e-33
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 52023482 - 52023572
Alignment:
| Q |
1 |
ctactgttcataaattttttagtttctatctcttattccagttggcattcttcaatggattacaataatccttgttgtcgttgcctcagct |
91 |
Q |
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| T |
52023482 |
ctactgttcatacaattttcagtttctatttcttattccagttggcattcttcaatggattacaataatccttgttgttgttgcctcagct |
52023572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 38683221 - 38683132
Alignment:
| Q |
1 |
ctactgttcataaattttttagtttctatctcttattccagttggcattcttcaatggattacaataatccttgttgtcgttgcctcagctag |
93 |
Q |
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| T |
38683221 |
ctactgttcataaaattttcagtttctatttcttattccagtcggcattcttcaattgattacaataatccttgtt---gttgcctcagctag |
38683132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 7857615 - 7857701
Alignment:
| Q |
8 |
tcataaattttttagtttcta-tctcttattccagttggcattcttcaatggattacaataatccttgttgtcgttgcctcagctag |
93 |
Q |
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||||||| |||| |||||||| | | |||||| |||||| ||||||||| ||||||||||||||||| || |||||||||||||| |
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| T |
7857615 |
tcataaaattttcagtttctaattttttattctagttggtgttcttcaatcgattacaataatccttgcggttgttgcctcagctag |
7857701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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