View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_4_58 (Length: 181)
Name: J5_4_58
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_4_58 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 40310801 - 40310621
Alignment:
| Q |
1 |
attttacccctttaaaaacaatggtgtcttttttatgttgttattgtggattgtcgtatcatctgtttggggaagaccagcaacttttaatcaagatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40310801 |
attttacccctttaaaaacaatggtgtcttttttatgttgttattgtggattgtcgtatcatctgtttggggaagaccagcaacttttaatcaagatttt |
40310702 |
T |
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| Q |
101 |
catgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggt |
181 |
Q |
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| T |
40310701 |
catgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggt |
40310621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 40320877 - 40320697
Alignment:
| Q |
1 |
attttacccctttaaaaacaatggtgtcttttttatgttgttattgtggattgtcgtatcatctgtttggggaagaccagcaacttttaatcaagatttt |
100 |
Q |
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| T |
40320877 |
attttacccctttaaaaacaatggtgtcttttttatgttgttattgtggattgtcgtatcatctgtttggggaagaccagcaacttttaatcaagatttt |
40320778 |
T |
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| Q |
101 |
catgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggt |
181 |
Q |
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| T |
40320777 |
catgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggt |
40320697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 4e-89
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 40313777 - 40313600
Alignment:
| Q |
1 |
attttacccctttaaaaacaatggtgtcttttttatgttgttattgtggattgtcgtatcatctgtttggggaagaccagcaacttttaatcaagatttt |
100 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40313777 |
attttacccttttaaaaacaatggtatcttttttatgttgttattgtggattgtcgtatcatctgtttggggaagaccagcaacttttaatcaagacttt |
40313678 |
T |
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| Q |
101 |
catgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctct |
178 |
Q |
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| T |
40313677 |
catgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctct |
40313600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 166; E-Value: 4e-89
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 40323853 - 40323676
Alignment:
| Q |
1 |
attttacccctttaaaaacaatggtgtcttttttatgttgttattgtggattgtcgtatcatctgtttggggaagaccagcaacttttaatcaagatttt |
100 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40323853 |
attttacccttttaaaaacaatggtatcttttttatgttgttattgtggattgtcgtatcatctgtttggggaagaccagcaacttttaatcaagacttt |
40323754 |
T |
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| Q |
101 |
catgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctct |
178 |
Q |
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| T |
40323753 |
catgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctct |
40323676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 40330350 - 40330163
Alignment:
| Q |
1 |
attttacccctttaaaaacaatggtgtcttttttatgttgttattgtggattgtcgtatcatctgttt-------ggggaagaccagcaacttttaatca |
93 |
Q |
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||||| ||| |||||| ||||| ||||||||||||| ||||| |||||||| || |||||| ||||| ||||||||||||||||||||||||| |
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| T |
40330350 |
attttccccttttaaacacaatagtgtcttttttatattgttgatgtggattctcttatcatgtgtttttggtttggggaagaccagcaacttttaatca |
40330251 |
T |
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| Q |
94 |
agattttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggt |
181 |
Q |
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| T |
40330250 |
agattttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggt |
40330163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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