View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_4_59 (Length: 467)
Name: J5_4_59
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_4_59 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 12316192 - 12315901
Alignment:
| Q |
1 |
acaggatcagtaacaggtttaacatttgacaacatccaaatggagaatgtaagaaactgtatcaacatagaccaattctactgtttatcaaaagagtgta |
100 |
Q |
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| T |
12316192 |
acaggatcagtaacaggtttaacatttgacaacatccaaatggagaatgtaagaaactgtatcaacatagaccaattctactgtttatcaaaagagtgta |
12316093 |
T |
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| Q |
101 |
tgaaccaaacatcagcagtatatgtaaacaatatctcctacagaaaaataaagggtacatatgatgtgagaacacctcctatacattttgcttgtagtga |
200 |
Q |
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| T |
12316092 |
tgaaccaaacatcagcagtatatgtaaacaatatctcctacagaaaaataaagggtacatatgatgtgagaacacctcctatacattttgcttgtagtga |
12315993 |
T |
|
| Q |
201 |
cactgntgcttgcacaaacataacactctctgagattgaacttttgccttatgaaggtgaattagtntgatgacccctttttgttggaatgctt |
294 |
Q |
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| T |
12315992 |
cactgttgcttgcacaaacataacactctctgagattgaacttttgccttatgaaggtgaattagt-tgatga-ccctttttgttggaatgctt |
12315901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 38834764 - 38835038
Alignment:
| Q |
18 |
tttaacatttgacaacatccaaatggagaatgtaagaaactgtatcaacatagaccaattctactgtttatcaaaagagtgtatgaaccaaacatcagca |
117 |
Q |
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| T |
38834764 |
tttaaaatttgagaacatacaaatggagaatgtaggaaactgcatccttatagaccaatactattgtttgacaaaggaatgtctaaatcaaacttcagct |
38834863 |
T |
|
| Q |
118 |
gtatatgtaaacaatatctcctacagaaaaataaagggtacatatgatgtgagaacacctcctatacattttgcttgtagtgacactgntgcttgcacaa |
217 |
Q |
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| T |
38834864 |
gtacatgttaatgatgtgtcctacaaaaacattaagggtacttatgatgttagaactgctcctattcattttgcttgtagtgacactgttgcttgtacaa |
38834963 |
T |
|
| Q |
218 |
acataacactctctgagattgaacttttgccttatgaaggtgaattagtntgatgacccctttttgttggaatgctt |
294 |
Q |
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| T |
38834964 |
acataacactctctgaggttgagcttttgccatttgaaggtgaatt-gttggatga-ccctttttgttggaatgctt |
38835038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 45101324 - 45101260
Alignment:
| Q |
175 |
cctcctatacattttgcttgtagtgacactgntgcttgcacaaacataacactctctgagattga |
239 |
Q |
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| T |
45101324 |
cctcctatgcattttgcttgtagtgactctgtcccttgcactaacataacactctcagaaattga |
45101260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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