View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_4_65 (Length: 485)
Name: J5_4_65
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_4_65 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 4032661 - 4032935
Alignment:
| Q |
1 |
agctggacaagagtatcgagttccgaccaaactccggtcggaacctcaccggagaatttgttccttgctaaaataagcctctgaagctgcctacatttct |
100 |
Q |
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| T |
4032661 |
agctggacaagagtatcgagttccgaccaaactccggtcggaacctcaccggagaatttgttccttgctaaaataagcctctgaagctgcctacatttct |
4032760 |
T |
|
| Q |
101 |
ggatatcattcggaatatcaccagagaaagaattatcggagaggtcgagattctggagtcgtggaacggtgcagacagaagccggaaacggaccggagag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4032761 |
ggatatcattcggaatatcaccagagaaagaattatcggagaggtcgagattctggagtcgtggaacggtgcagacagaagccggaaacggaccggagag |
4032860 |
T |
|
| Q |
201 |
attattccggtgaagaaaaatactatgaagtgcagtagcattaaacaactgaaccggaacaacaccatagaattc |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4032861 |
attattccggtgaagaaaaatactatgaagtgcagtagcattaaacaactgaaccggaacaacaccatagaattc |
4032935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 5e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 270 - 432
Target Start/End: Complemental strand, 14879345 - 14879183
Alignment:
| Q |
270 |
gaattccttcttgttttctcagatgtttgtttgaacaagttgttgactaatctttgaaccctttgagaaatgttgtaattctagaaagatatgtagattt |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14879345 |
gaattccttcttgttttctcagatgtttgtttgaacaagttgttgactaatctttgaaccctttgagaaatgttgtaattctagaaagatatgtagattt |
14879246 |
T |
|
| Q |
370 |
ctttgccacttgtgttttcagatcataatttggaaaattcttaacacttgnatgtctttgctc |
432 |
Q |
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| T |
14879245 |
ctttgccacttgtgttttcagatcataatttggaaaattcttaacacttgtatgtctttgctc |
14879183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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