View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_4_7 (Length: 581)
Name: J5_4_7
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_4_7 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 253 - 581
Target Start/End: Original strand, 36396034 - 36396362
Alignment:
| Q |
253 |
attaataatgtcctgttctgtctgtatatcgtatagaattttgactaataatggtctgtgctcttgtattgctatgtgtgaaggattgtttgatagaggg |
352 |
Q |
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| T |
36396034 |
attaataatgtcctgttctgtctgtatatcgtatagaattttgactaataatggtctgtgctcttgtattgctatgtgtgaaggattgtttgatagaggg |
36396133 |
T |
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| Q |
353 |
taatccaggaaatggtcccnatgagacatcggcttctggttgctcaaacagaacccttctcctaccttgctcttctaacatggatgcgtccgatgatgca |
452 |
Q |
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| T |
36396134 |
taatccaggaaatggtcccaatgaggcatcggcttctggttgctcaaacagaacccttctcctaccttgctcttctaacatggatgcgtccgatgatgca |
36396233 |
T |
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| Q |
453 |
ccattacctagtcaggctgttggcactatatcagctgccagtgaaactggtcatcaacttcctatgactgnggacactgcatcagctacaagcaaagctg |
552 |
Q |
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| T |
36396234 |
ccattacctagtcaggctgttggcactatatcagctgccagtgaaactggtcatcaacttcctatgactgtggacactgcatcagctacaagcaaagctg |
36396333 |
T |
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| Q |
553 |
ttattgagcttcccatcaagcccgtcaac |
581 |
Q |
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| T |
36396334 |
ttattgagcttcccatcaagcccgtcaac |
36396362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 36396358 - 36396615
Alignment:
| Q |
1 |
tcaacaattcagccaccaccagtcaaccaagtaatcaactttccattatggctgcagacactgaaacagctgcgagcaaaactgntaatgaacttcccat |
100 |
Q |
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| T |
36396358 |
tcaacaattcagccaccaccagtcaaccaagtaatcaactttccattatggctgcagacactgaaacagctgcgagcaaaactgttaatgaacttcccat |
36396457 |
T |
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| Q |
101 |
caagcccgttgacacttcanctgtcaccagccaacctagtantccaccttccattaaggntgnaggcnctgtatctgcaaccaatgaaattaacaaccaa |
200 |
Q |
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| T |
36396458 |
caagcccgttgacacttcatctgtcaccagccaacctagtaatccaccttccattaaggctgtaggcactgtatctgcaaccaatgaaattaacaaccaa |
36396557 |
T |
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| Q |
201 |
gttcccagcaaggctattatagagactgtatcagcagacaatggatatggtaattaat |
258 |
Q |
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| T |
36396558 |
gttcccagcaaggctattatagagactgtatcagcagacaatggatatggtaattaat |
36396615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 2944042 - 2943954
Alignment:
| Q |
169 |
ctgtatctgcaaccaatgaaattaacaaccaagttcccagcaaggctattatagagactgtatcagcagacaatggatatggtaattaa |
257 |
Q |
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| T |
2944042 |
ctgtatctgcaaccaatgaaattaacaaccaagttcccatcaaggctattatagagactgtatcagcagacaatggatatggtaattaa |
2943954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 408 - 501
Target Start/End: Complemental strand, 2944254 - 2944157
Alignment:
| Q |
408 |
cttctcctacctt----gctcttctaacatggatgcgtccgatgatgcaccattacctagtcaggctgttggcactatatcagctgccagtgaaactg |
501 |
Q |
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| T |
2944254 |
cttctcctaccttgctagctcttctaacatggacgtgtccgatgatgcaccattacctagtcaggctgttggcactatatcagcagccagtgaaactg |
2944157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 2944118 - 2944053
Alignment:
| Q |
39 |
ctttccattatggctgcagacactgaaacagctgcgagcaaaactgntaatgaacttcccatcaag |
104 |
Q |
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| T |
2944118 |
ctttccattatggctgaagacactgaaacagctgcgagcaaaactgttaatgaacttcccatcaag |
2944053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 36395991 - 36396043
Alignment:
| Q |
253 |
attaataatgtcctgttctgtctgtatatcgtatagaattttgactaataatg |
305 |
Q |
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| T |
36395991 |
attaataatgtcctgttttgtctgtgtatcgtatagaattttgattaataatg |
36396043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 10781749 - 10781701
Alignment:
| Q |
313 |
ctcttgtattgctatgtgtgaaggattgtttgatagagggtaatccagg |
361 |
Q |
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| T |
10781749 |
ctcttgtattcctatgtgtgaaggattgtttgatagagggtaatccagg |
10781701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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