View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_4_77 (Length: 181)
Name: J5_4_77
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_4_77 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 18015512 - 18015692
Alignment:
| Q |
1 |
cacctaccataccatttatatttagccatatatacatggtagtaacagaaatgagttcattttctctattgtgtatcttggccttattactcgttattgg |
100 |
Q |
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| T |
18015512 |
cacctaccataccatttatatttagccatatatacatggtagtaacagaaatgagttcattttctctattgtgtatcttggccttattactcgttattgg |
18015611 |
T |
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| Q |
101 |
tcatgtagcaaatgaccaaaactcacgagcagactatgtgaacgctcacaacgacgcaagacgtcaggttggtgttggaga |
181 |
Q |
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| T |
18015612 |
tcatgtagcaaatgcccaaaactcacgagcagactatgtgaacgcccacaacgacgcaagacgtcaggttggtgttggaga |
18015692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 3063808 - 3063628
Alignment:
| Q |
1 |
cacctaccataccatttatatttagccatatatacatggtagtaacagaaatgagttcattttctctattgtgtatcttggccttattactcgttattgg |
100 |
Q |
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| T |
3063808 |
cacctaccataccatttatatttagccatatatacatggtagtaacagaaatgagttcattttctctattgtgtatcttggccttattactcgttattgg |
3063709 |
T |
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| Q |
101 |
tcatgtagcaaatgaccaaaactcacgagcagactatgtgaacgctcacaacgacgcaagacgtcaggttggtgttggaga |
181 |
Q |
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| T |
3063708 |
tcatgtagcaaatgcccaaaactcacgagcagactatgtgaacgcccacaacgacgcaagacgtcaggttggtgttggaga |
3063628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 2466285 - 2466419
Alignment:
| Q |
43 |
taacagaaatgagttcattttctctattgtgtatcttggccttattactcgttattggtcatgtagcaaatgaccaaaactcacgagcagactatgtgaa |
142 |
Q |
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| T |
2466285 |
taacaaaaatgagttcattttctctactgtgtttcttgggcttattactcattattggtcatgttgcacatgcccaagactcacaagcagactatgtgaa |
2466384 |
T |
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| Q |
143 |
cgctcacaacgacgcaagacgtcaggttggtgttg |
177 |
Q |
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| T |
2466385 |
cgctcacaacgaagcaagatctgaggttggtgttg |
2466419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 2462231 - 2462365
Alignment:
| Q |
43 |
taacagaaatgagttcattttctctattgtgtatcttggccttattactcgttattggtcatgtagcaaatgaccaaaactcacgagcagactatgtgaa |
142 |
Q |
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| T |
2462231 |
taacaaaaatgagttcattttctctattgtgtgtgctgggcttatccctcattatggttcacgttgcacatgcccaaaactcacaatcagactatgtgaa |
2462330 |
T |
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| Q |
143 |
cgctcacaacgacgcaagacgtcaggttggtgttg |
177 |
Q |
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| T |
2462331 |
cgcccacaacgacgcaagacgtcaggttggtgttg |
2462365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 2457669 - 2457795
Alignment:
| Q |
51 |
atgagttcattttctctattgtgtatcttggccttattactcgttattggtcatgtagcaaatgaccaaaactcacgagcagactatgtgaacgctcaca |
150 |
Q |
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|||||||||||||||||| | ||| |||||| ||||| || |||||||||| || ||| ||| ||||||||||| |||||||||||||||| | |||| |
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| T |
2457669 |
atgagttcattttctctaatatgtgtcttgggtttatttatcattattggtcacgttgcacatgcccaaaactcacaagcagactatgtgaactcccaca |
2457768 |
T |
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| Q |
151 |
acgacgcaagacgtcaggttggtgttg |
177 |
Q |
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| T |
2457769 |
acgaagcaagacgtcaggttggtgttg |
2457795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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