View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_8_16 (Length: 370)
Name: J5_8_16
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_8_16 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 17456209 - 17456021
Alignment:
| Q |
1 |
gtgactgtgatttaaaatcttgatcactttgtagtataattcaattctttaaaaacttttcatgaggactaatttgcaagatttaccttttgatgattat |
100 |
Q |
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| T |
17456209 |
gtgactgtgatttaaaatcttgatcactttgtagtataattcaattctttaaaaacttttcatgaggactaatttgcaagatttaccttttgatgattat |
17456110 |
T |
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| Q |
101 |
attcatttaactgcataattctcaatggattttatgaacacagtacatttttcacaatctgttgtttaatatattcataatcattaatt |
189 |
Q |
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| T |
17456109 |
attcatttaactgcataattctcaatggattttatgaacacagtacatttttcacaatctgttgtttaatatattcataatcattaatt |
17456021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 183 - 370
Target Start/End: Complemental strand, 17456392 - 17456205
Alignment:
| Q |
183 |
attaatttatcctctgaatgaaaatgttagaggaactaattgtttattattttttgtcacggattaaatcgaaccatgagtaaattgcgaggattcaaat |
282 |
Q |
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| T |
17456392 |
attaatttatcctctgaatgaaaatgttagaggaactaattgtttattattttttgtcacggattaaatcgaaccatgagtaaattgtgaggattcaaat |
17456293 |
T |
|
| Q |
283 |
tggatctttattcttaatttaaaggtttcgttgtgattgcaattgaagctgcatcaactttataaatttagttgtgtgacgatgtgac |
370 |
Q |
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| T |
17456292 |
tggatctttattcttaatttaaaggtttcgttgtgattgcaattgaagctgcatcaactttataaatttagttgtgtgacgatgtgac |
17456205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 17435073 - 17434972
Alignment:
| Q |
264 |
aaattgcgaggattcaaattggatctttattcttaattt---aaaggtttcgttgtgattgcaattgaagctgcatcaactttataaatttagttgtgtg |
360 |
Q |
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|||||| || ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| | | |||||||||||||| |
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| T |
17435073 |
aaattgtgaagattcaaattggatctttattcttaattttttaaaggttttgttgtgatagcaattgaagctgcatcaactgtgttaatttagttgtgtg |
17434974 |
T |
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| Q |
361 |
ac |
362 |
Q |
| |
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|| |
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| T |
17434973 |
ac |
17434972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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