View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_8_27 (Length: 593)
Name: J5_8_27
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_8_27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 280 - 593
Target Start/End: Complemental strand, 30007386 - 30007072
Alignment:
| Q |
280 |
attattattaatgacttacttattcccaagaacagcatgcaaattgatgattgttttctcttcttcatctgcgaattgtcctcttttgatatcaggtctt |
379 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30007386 |
attaatattaatgacttacttattcccaagaacagcatgcaaattgatgattgttttctcttcttcatctgtgaattgtcctcttttgatatcaggtctt |
30007287 |
T |
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| Q |
380 |
aaatagttagtccaccttagtctgcaacttttcccacatctgttcaatcctgctagctttggaagtgctctccaacttccatggccatgtttcttaatgt |
479 |
Q |
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| T |
30007286 |
aaatagttagtccaccttagtctgcaacttttcccacatctgttcaatcctgctagctttggaagtgctctccaacttccatggccatgtttcttaatgt |
30007187 |
T |
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| Q |
480 |
gattcaccaatattctgtcctcttctggtgtccaaggtcccttcttc-aaccactttcatcacagcatggtgctctccccatcatcaccagcagtagcac |
578 |
Q |
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| T |
30007186 |
gattcaccaatattctgtcctcttctggtgtccaaggtcccttcttcaaaccactttcatcacagcatggtgctctccccatcatcaccagcagtagcac |
30007087 |
T |
|
| Q |
579 |
tgcacaaacataaag |
593 |
Q |
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||||||||||||||| |
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| T |
30007086 |
tgcacaaacataaag |
30007072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 30007076 - 30006786
Alignment:
| Q |
1 |
taaaggatatatataaattaaaagaatttagtttaaggaatagttacgatgattacaaaagagagtaatatgactccatacctaggagtgtttgaaatgg |
100 |
Q |
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| T |
30007076 |
taaaggatatatataaattaaaagaatttagtttaaggaatagttacgatgattacaaaagagagtaatatgactccatacctaggagtgtttgaaatgg |
30006977 |
T |
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| Q |
101 |
agaatgtattacggtatgtagacttatagtacaattatgttggaactaacttggctaaatagcataggagctttgttatatatagtatggtgatgtgtga |
200 |
Q |
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| T |
30006976 |
agaatgtattacggtatgtagacttatagtacaattatgttggaactaacttggctaaatagcataggagctttgttatatatagtatggtgatgtgtga |
30006877 |
T |
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| Q |
201 |
tgtttggagtgtttatgctttctaagactttgttaagttttataatgctatcatttnnnnnnntaattgaaaaagagaaattattattaat |
291 |
Q |
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| T |
30006876 |
tgtttggagtgtttatgctttctaagactttgttaagttttataatgctatcatttaaaaaaataattgaaaaagagaaattattattaat |
30006786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 9e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 294 - 540
Target Start/End: Original strand, 1319259 - 1319506
Alignment:
| Q |
294 |
cttacttattcccaagaacagcatgcaaattgatgattgttttctcttcttcatctgcgaattgtcctcttttgatatcaggtcttaaatagttagtcca |
393 |
Q |
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|||||||||| |||||||| | ||| ||||||||||| || ||||||||||| | ||||| ||||||| | |||||||| |||| ||| ||| |||| |
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| T |
1319259 |
cttacttatttccaagaactgaatgtaaattgatgatgagattttcttcttcatcagagaattttcctcttctaatatcaggccttagataattattcca |
1319358 |
T |
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| Q |
394 |
ccttagtctgcaacttttcccacatctgttcaatcctgctagctttggaagtgctctccaacttccatggccatgtttcttaatgtgattcaccaatatt |
493 |
Q |
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| T |
1319359 |
tctaagtctacaactctttccacatctattcaatcctgcaagctttggaagagctctccaacttccatggccatgtttctgaatgtgatccactaatatt |
1319458 |
T |
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| Q |
494 |
ctgtcctcttctggtgtccaaggtcccttcttc-aaccactttcatca |
540 |
Q |
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| T |
1319459 |
ttatcttcttctggactccatggacccttcttcaaaccactttcatca |
1319506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 294 - 535
Target Start/End: Complemental strand, 1281459 - 1281217
Alignment:
| Q |
294 |
cttacttattcccaagaacagcatgcaaattgatgattgttttctcttcttcatctgcgaattgtcctcttttgatatcaggtcttaaatagttagtcca |
393 |
Q |
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|||||||||| |||||||| | ||| ||||||||||| || |||||||||||| | |||| |||||||| |||||||| |||||||| || ||||| |
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| T |
1281459 |
cttacttatttccaagaactgaatgtaaattgatgatgagttcctcttcttcatcagaaaatttccctcttttaatatcaggacttaaataatttgtcca |
1281360 |
T |
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| Q |
394 |
ccttagtctgcaacttttcccacatctgttcaatcctgctagctttggaagtgctctccaacttccatggccatgtttcttaatgtgattcaccaatatt |
493 |
Q |
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| T |
1281359 |
tcttaacctacaactctttccacatctgtttaatcctgcacgccttggaagatctctccaacgtccaggaccatgtttctgaatgtgatccactaatttt |
1281260 |
T |
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| Q |
494 |
ctgtcctcttctggtgtccaaggtcccttcttca-accacttt |
535 |
Q |
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| T |
1281259 |
ttatcctcttctgaactccatggtcccttcttcagaccacttt |
1281217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 338 - 471
Target Start/End: Complemental strand, 12552057 - 12551924
Alignment:
| Q |
338 |
tcttcttcatctgcgaattgtcctcttttgatatcaggtcttaaatagttagtccaccttagtctgcaacttttcccacatctgttcaatcctgctagct |
437 |
Q |
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||||||||||| | ||||| ||||| ||||||||||| || ||||| || |||||||||| || ||||| |||||||| || ||||| || || | | |
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| T |
12552057 |
tcttcttcatcagtgaatttccctctcttgatatcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaaccagcacgtt |
12551958 |
T |
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| Q |
438 |
ttggaagtgctctccaacttccatggccatgttt |
471 |
Q |
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| T |
12551957 |
ttgaaagtgttccccaatttccatggccatgttt |
12551924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 480
Target Start/End: Complemental strand, 33695229 - 33695180
Alignment:
| Q |
431 |
gctagctttggaagtgctctccaacttccatggccatgtttcttaatgtg |
480 |
Q |
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|||||||| || |||||||||||||||||||||||||||| || |||||| |
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| T |
33695229 |
gctagcttagggagtgctctccaacttccatggccatgttgctgaatgtg |
33695180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 13994081 - 13994133
Alignment:
| Q |
359 |
cctcttttgatatcaggtcttaaatagttagtccaccttagtctgcaactttt |
411 |
Q |
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| T |
13994081 |
cctcttttgataccaggtctaagataattagtccatctaagtctgcaactttt |
13994133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 417
Target Start/End: Original strand, 33732184 - 33732264
Alignment:
| Q |
337 |
ctcttcttcatctgcgaattgtcctcttttgatatcaggtcttaaatagttagtccaccttagtctgcaacttttcccaca |
417 |
Q |
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| T |
33732184 |
ctcttcttcatttgtgaaatttcctctcttaatatctggtctcaaatagttaatccacctaagtctgcagctttttccaca |
33732264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 16138874 - 16138971
Alignment:
| Q |
323 |
ttgatgattgttttctcttcttcatctgcgaattgtcctcttttgatatcaggtcttaaatagttagtccaccttagtctgcaacttttcccacatct |
420 |
Q |
| |
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|||||||| |||| ||||||||||| || || | |||||| || ||||||||| ||||||||||| |||| || | ||| ||||| || |||||||| |
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| T |
16138874 |
ttgatgatagtttcctcttcttcatttgtaaaatttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatct |
16138971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 48892614 - 48892676
Alignment:
| Q |
358 |
tcctcttttgatatcaggtcttaaatagttagtccaccttagtctgcaacttttcccacatct |
420 |
Q |
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|||||| || ||||| ||||||| |||||| |||| ||||||||||||||||| |||||||| |
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| T |
48892614 |
tcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct |
48892676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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