View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_8_38 (Length: 642)
Name: J5_8_38
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_8_38 |
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Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 40756116 - 40756640
Alignment:
| Q |
1 |
gaaatgtcactggagtttagaaaactgtttccttgggttgaactaagggcgggttatggactaacagaaagttgcgggggagctacgtttttcggatcgg |
100 |
Q |
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| T |
40756116 |
gaaatgtcactggagtttagaaaactgtttccttgggttgaactaagggcgggttatggactaacagaaagttgcgggggagctacgtttttcggatcgg |
40756215 |
T |
|
| Q |
101 |
ataaagatgctaaagctcatccagaagcatgtggaaagttgattccaactttttgtgcaaaagtggtagacattgaaacagggaagcctttgcctccact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40756216 |
ataaagatgctaaagctcatccagaagcatgtggaaagttgattccaactttttgtgcaaaagtggtagacattgaaacagggaagcctttgcctccact |
40756315 |
T |
|
| Q |
201 |
caaggaaggagagttatggttgaaaagcggtactattatgaaagaatatttaggaaatattgaggcaacaactgcaacaattgattcagaaggttggttg |
300 |
Q |
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| T |
40756316 |
caaggaaggagagttatggttgaaaagcggtactattatgaaagaatatttaggaaatattgaggcaacaactgcaacaattgattcagaaggttggttg |
40756415 |
T |
|
| Q |
301 |
aggacaggtgatcttggttatattgatgagaatggaattgtctacatagtcgaacgaataaaggagctaatcaagcacaaagggtatcaggtactcaaat |
400 |
Q |
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| T |
40756416 |
aggacaggtgatcttggttatattgatgagaatggaattgtctacatagtcgaacgaataaaggagctaatcaagcacaaagggtatcaggtactcaaat |
40756515 |
T |
|
| Q |
401 |
tcataaatagtttaagtttcaatagtgaagttttgttgcacttgaagttaaattagaatatcagtaaattcctttagttctaaggtatcaaattgagttt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40756516 |
tcataaatagtttaagtttcaatagtgaagttttgttgcacttgaagttaaattagaatatcagtaaattcctttagttctaaggtatcaaattgagttt |
40756615 |
T |
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| Q |
501 |
ggaacggttttagttttcattaata |
525 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
40756616 |
ggaacggttttagttttcattaata |
40756640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 519 - 642
Target Start/End: Original strand, 40755996 - 40756120
Alignment:
| Q |
519 |
attaataacataccggcagtgccaccagtgatccnctcattagtgaaacatgctagcaaagatggttgtgatttgtctagcctaa-aanagttggctcag |
617 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
40755996 |
attaataacataccagcagtgccaccagtgatccactcattagtgaaacatgctagcaaagatggttgtgatttgtctagcctaagaagagttggctcag |
40756095 |
T |
|
| Q |
618 |
gacctgcncctttgagtaaggaaat |
642 |
Q |
| |
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|| |||| ||||||||||||||||| |
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|
| T |
40756096 |
gagctgcacctttgagtaaggaaat |
40756120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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