View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_8_55 (Length: 358)
Name: J5_8_55
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_8_55 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 115 - 358
Target Start/End: Original strand, 48416291 - 48416534
Alignment:
| Q |
115 |
caaacctgggtgcatttcagtgatctctgagcaacataattcccaaaaggatcttgaagaacattcaagaaatcatgactactaattatctcctcaacta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48416291 |
caaacctgggtgcatttcagtgatctctgagcaacataattcccaaaaggatcttgaagaacattcaagaaatcatgactactaattatctcctcaacta |
48416390 |
T |
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| Q |
215 |
taacttcaacatcatccagtttagagaatgtcaataaattttccnctacattgctggcatacttgttcacagaaagtcttacgaattggccacgaagttc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48416391 |
taacttcaacatcatccagtttagagaatgtcaataaattttccactacattgctggcatacttgttcacagaaagtcttacgaattggccacgaagttc |
48416490 |
T |
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| Q |
315 |
ttttaccatttgttcatttgctgacgcaaacttcatcataatta |
358 |
Q |
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| T |
48416491 |
ttttaccatttgttcatttgctgacgcaaacttcatcataatta |
48416534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 45174486 - 45174372
Alignment:
| Q |
115 |
caaacctgggtgcatttcagtgatctctgagcaacataattcccaaaaggatcttgaagaacattcaagaaatcatgactactaattatctcctcaacta |
214 |
Q |
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||||||| |||||||| |||| ||| || || |||||||| ||||| |||||||||| ||||||||||||||| ||| | |||||||||||||||| |
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| T |
45174486 |
caaaccttagtgcatttgagtgctctttgtgccacataatttccaaagggatcttgaacgacattcaagaaatcacaacttttcattatctcctcaacta |
45174387 |
T |
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| Q |
215 |
taacttcaacatcat |
229 |
Q |
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|||| ||||||||| |
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| T |
45174386 |
taacagcaacatcat |
45174372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 48416530 - 48416572
Alignment:
| Q |
1 |
aattacacatttcaacacatagtttcttcaaacatacaaaaaa |
43 |
Q |
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| T |
48416530 |
aattacacatttcaacacatagtttcttcaaacatacaaaaaa |
48416572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 131 - 336
Target Start/End: Complemental strand, 732593 - 732388
Alignment:
| Q |
131 |
tcagtgatctctgagcaacataattcccaaaaggatcttgaagaacattcaagaaatcatgactactaattatctcctcaactataacttcaacatcatc |
230 |
Q |
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|||||| ||| |||||||||||||||||| | ||||| ||||||||||||||||||| | | || || |||||||||||| ||||||||| |||| |||| |
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| T |
732593 |
tcagtgctctttgagcaacataattcccatagggatcgtgaagaacattcaagaaattacggcttctcattatctcctcagctataactttaacagcatc |
732494 |
T |
|
| Q |
231 |
cagtttagagaatgtcaataaattttccnctacattgctggcatacttgttcacagaaagtcttacgaattggccacgaagttcttttaccatttgttca |
330 |
Q |
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| | ||||| || ||| || || |||| |||||||||||||||||||||||||||||||||| | |||| || ||||| |||| ||||||||||||| |
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| T |
732493 |
ctgattagaaaagctcagtagatattccactacattgctggcatacttgttcacagaaagtctatcaaatttgctccgaagctcttgtaccatttgttca |
732394 |
T |
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| Q |
331 |
tttgct |
336 |
Q |
| |
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|||||| |
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| T |
732393 |
tttgct |
732388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 738509 - 738405
Alignment:
| Q |
116 |
aaacctgggtgcatttcagtgatctctgagcaacataattcccaaaaggatcttgaagaacattcaagaaatcatgactactaattatctcctcaactat |
215 |
Q |
| |
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||||||| |||||||| |||| ||||| |||||||||||| ||||| ||||| |||||||| |||||||||| | | || || |||||||| ||||| || |
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| T |
738509 |
aaacctgagtgcatttgagtgctctctaagcaacataatttccaaagggatcctgaagaactttcaagaaattacggcttctcattatctcttcaacaat |
738410 |
T |
|
| Q |
216 |
aactt |
220 |
Q |
| |
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||||| |
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| T |
738409 |
aactt |
738405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 732370 - 732328
Alignment:
| Q |
1 |
aattacacatttcaacacatagtttcttcaaacatacaaaaaa |
43 |
Q |
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|||||||| || || |||||||||||||||||||||||||||| |
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| T |
732370 |
aattacacgttgcaccacatagtttcttcaaacatacaaaaaa |
732328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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