View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_8_56 (Length: 521)
Name: J5_8_56
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_8_56 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 465; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 45 - 521
Target Start/End: Original strand, 17455733 - 17456209
Alignment:
| Q |
45 |
aattcccagcttcntcaacaacttcagcatcaaaactcttgattgctacatgaccttttggaaaatcaatatcatcataaaatttatttataactgatcc |
144 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17455733 |
aattcccagcttcatcaacaacttcagcatcaaaactcttgattgctacatgaccttttggaaaatcaatatcatcataaaatttatttataactgatcc |
17455832 |
T |
|
| Q |
145 |
aggtcttagctcaaattttggggacaaaaacactgctgattttatcctttcttcggtcttctcgtaagaacttgagcatggtgtgcttaataacaccaca |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17455833 |
aggtcttagctcaaattttggggacaaaaacactgctgattttatcctttcttcggtcttctcgtaagaacttgagcatggtgtgcttaataacaccaca |
17455932 |
T |
|
| Q |
245 |
ngtatggcaagtgaaagtacaaaatctctaggtacaaacaacatgctgatctgtcagcaatatctttattagtaatgatnaaggaactaattaatgatta |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17455933 |
agtatggcaagtgaaagtacaaaatctctaggtacaaacaacatgctgatctgtcagcaatatctttattagtaatgattaaggaactaattaatgatta |
17456032 |
T |
|
| Q |
345 |
tgaatatattaaacaacagattgtgaaaaatgtactgtgttcataaaatccattgagaattatgcagttaaatgaatataatcatcaaaaggtaaatctt |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17456033 |
tgaatatattaaacaacagattgtgaaaaatgtactgtgttcataaaatccattgagaattatgcagttaaatgaatataatcatcaaaaggtaaatctt |
17456132 |
T |
|
| Q |
445 |
gcaaattagtcctcatgaaaagtttttaaagaattgaattatactacaaagtgatcnagattttaaatcacagtcac |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17456133 |
gcaaattagtcctcatgaaaagtttttaaagaattgaattatactacaaagtgatcaagattttaaatcacagtcac |
17456209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 45 - 284
Target Start/End: Original strand, 17434630 - 17434869
Alignment:
| Q |
45 |
aattcccagcttcntcaacaacttcagcatcaaaactcttgattgctacatgaccttttggaaaatcaatatcatcataaaatttatttataactgatcc |
144 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17434630 |
aattcccagcttcatcaacaacttctgcatcaaaactcttgattgctacatgaccttttggaaaatcaatatcataataaaatttatttataactgatcc |
17434729 |
T |
|
| Q |
145 |
aggtcttagctcaaattttggggacaaaaacactgctgattttatcctttcttcggtcttctcgtaagaacttgagcatggtgtgcttaataacaccaca |
244 |
Q |
| |
|
|||| || ||||||||||||||||||||||| ||||||||||| ||||||| |||||||| | |||||||||||||||||||||||||||| |||| |
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| T |
17434730 |
tggtcctaactcaaattttggggacaaaaacatagctgattttattttttcttcagtcttctcaaatgaacttgagcatggtgtgcttaataacaacaca |
17434829 |
T |
|
| Q |
245 |
ngtatggcaagtgaaagtacaaaatctctaggtacaaaca |
284 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||| |
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| T |
17434830 |
agtattgcaagtgaaagtaagaaatctctaggtacaaaca |
17434869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 18559537 - 18559632
Alignment:
| Q |
94 |
atgaccttttggaaaatcaatatcatcataaaatttatttataactgatccaggtcttagctcaaattttggggacaaaaacactgctgattttat |
189 |
Q |
| |
|
||||||| |||||||||||||||||| |||| || |||| |||||||||||||||| || ||||||||| ||||||||||| || ||||||||||| |
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| T |
18559537 |
atgacctcttggaaaatcaatatcataataatatctattgataactgatccaggtcctaactcaaatttaggggacaaaaatacagctgattttat |
18559632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17456205 - 17456252
Alignment:
| Q |
1 |
gtcacatcgtcacacaactaaatttataaagttgatgcagcttcaatt |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17456205 |
gtcacatcgtcacacaactaaatttataaagttgatgcagcttcaatt |
17456252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 34212325 - 34212369
Alignment:
| Q |
72 |
catcaaaactcttgattgctacatgaccttttggaaaatcaatat |
116 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||||| ||||||| |
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|
| T |
34212325 |
catcaaaactcttgattccaacatgaccctttggaaattcaatat |
34212369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 54 - 297
Target Start/End: Original strand, 38221131 - 38221377
Alignment:
| Q |
54 |
cttcntcaacaacttcagcatcaaaactcttgattgctacatgaccttttggaaaatcaatatcatcataaaatttatttataactgatccaggtcttag |
153 |
Q |
| |
|
|||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||||||||||||||| ||| |
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|
| T |
38221131 |
cttcatcaactacttcagcatggaaactcttgattgctacatgacctcttggaaaatcaatatcataataatatttattgataactgatccaggtcctag |
38221230 |
T |
|
| Q |
154 |
ctcaaattttggggacaaaaacactgctgattttatcctttcttcggtcttctcgtaagaacttgagcatgg---tgtgcttaataacaccacangtatg |
250 |
Q |
| |
|
||| ||||| ||||||||||| || |||||||||||| | | ||| || ||| | |||||| | ||||||| ||||| || |||| |||| |||| |
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|
| T |
38221231 |
ctcgaatttcggggacaaaaatacagctgattttatcttattttcagttttcacaaaagaacctaagcatggtactgtgccaaacaacagcacaagtatt |
38221330 |
T |
|
| Q |
251 |
gcaagtgaaagtacaaaatctctaggtacaaacaacatgctgatctg |
297 |
Q |
| |
|
|| | ||||| |||||||||||||||||| || ||||| ||||||| |
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|
| T |
38221331 |
gccaatgaaaaaacaaaatctctaggtacacaccacatgttgatctg |
38221377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 54 - 298
Target Start/End: Original strand, 38215092 - 38215339
Alignment:
| Q |
54 |
cttcntcaacaacttcagcatcaaaactcttgattgctacatgaccttttggaaaatcaatatcatcataaaatttatttataactgatccaggtcttag |
153 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||| || |||| |||||||||||||||| ||| |
|
|
| T |
38215092 |
cttcatcaacaacttcagcattgaaactcttgagtgctacatgacctcttggaaaatcaatatcataataatatctattgataactgatccaggtcctag |
38215191 |
T |
|
| Q |
154 |
ctcaaattttggggacaaaaacactgctgattttatcctttcttcggtcttctcgtaagaacttgag---catggtgtgcttaataacaccacangtatg |
250 |
Q |
| |
|
||| ||||| ||||||||||| || |||||||| ||| | | ||| |||||| ||||| ||||| |||||||||| || |||| |||| |||| |
|
|
| T |
38215192 |
ctcgaatttcggggacaaaaatacagctgatttgatcttattttcagtcttcaaaaaagaagttgagaatgatggtgtgctaaagaacagcacaagtatt |
38215291 |
T |
|
| Q |
251 |
gcaagtgaaagtacaaaatctctaggtacaaacaacatgctgatctgt |
298 |
Q |
| |
|
|| ||||||| |||||||| || | ||||||| ||||| |||||||| |
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|
| T |
38215292 |
gctagtgaaaatacaaaatgtccacatacaaaccacatgttgatctgt |
38215339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 50 - 230
Target Start/End: Original strand, 38254238 - 38254418
Alignment:
| Q |
50 |
ccagcttcntcaacaacttcagcatcaaaactcttgattgctacatgaccttttggaaaatcaatatcatcataaaatttatttataactgatccaggtc |
149 |
Q |
| |
|
|||| ||| ||||| |||||||||| ||| ||||||||||| ||| ||| |||||||||||||||||| |||| || |||| | |||||||||||||| |
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|
| T |
38254238 |
ccagattcatcaactacttcagcatggaaatccttgattgctatatggcctcttggaaaatcaatatcataataatatctattgacaactgatccaggtc |
38254337 |
T |
|
| Q |
150 |
ttagctcaaattttggggacaaaaacactgctgattttatcctttcttcggtcttctcgtaagaacttgagcatggtgtgc |
230 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||||| | ||||| |||||| | ||||||||||||||||||||| |
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|
| T |
38254338 |
ctagctcaaatttcggggacaaaaaaacagctgattttatcttatcttcagtcttcacaaaagaacttgagcatggtgtgc |
38254418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 190
Target Start/End: Original strand, 38239003 - 38239147
Alignment:
| Q |
46 |
attcccagcttcntcaacaacttcagcatcaaaactcttgattgctacatgaccttttggaaaatcaatatcatcataaaatttatttataactgatcca |
145 |
Q |
| |
|
|||||| | ||| ||||| |||||||||| |||||||||| ||||||||||||| |||||||| ||||||||| |||| || ||| | |||||||||| |
|
|
| T |
38239003 |
attccctgattcgtcaactacttcagcattgaaactcttgagtgctacatgacctcttggaaaaccaatatcataataatatccattgacaactgatcca |
38239102 |
T |
|
| Q |
146 |
ggtcttagctcaaattttggggacaaaaacactgctgattttatc |
190 |
Q |
| |
|
|||| |||||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
38239103 |
ggtcctagctcaaatttcggggacaaaaatacagctgattttatc |
38239147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 54 - 294
Target Start/End: Original strand, 38249127 - 38249367
Alignment:
| Q |
54 |
cttcntcaacaacttcagcatcaaaactcttgattgctacatgaccttttggaaaatcaatatcatcataaaatttatttataactgatccaggtcttag |
153 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||| |||| | ||||||||||||||| || ||||||| |||| |||||||||||||||| || |
|
|
| T |
38249127 |
cttcatcaacaacttcagcattgaaactcttgagtgctatatgatcacttggaaaatcaatataataataaaatctattgataactgatccaggtccaag |
38249226 |
T |
|
| Q |
154 |
ctcaaattttggggacaaaaacactgctgattttatcctttcttcggtcttctcgtaagaacttgagcatggtgtgcttaataacaccacangtatggca |
253 |
Q |
| |
|
||||| || ||||||| ||| || ||||||||||| | | ||| |||||||| |||||||| |||||||||||| || || | | | |||| || |
|
|
| T |
38249227 |
ttcaaacttaggggacagaaaaacagctgattttattttattttcagtcttctcaaaagaacttaagcatggtgtgccaaacaataatagaagtattgct |
38249326 |
T |
|
| Q |
254 |
agtgaaagtacaaaatctctaggtacaaacaacatgctgat |
294 |
Q |
| |
|
| ||| | | |||||||||||||||||||| ||||| |||| |
|
|
| T |
38249327 |
actgacaattcaaaatctctaggtacaaaccacatgttgat |
38249367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 38243979 - 38244114
Alignment:
| Q |
54 |
cttcntcaacaacttcagcatcaaaactcttgattgctacatgaccttttggaaaatcaatatcatcataaaatttatttataactgatccaggtcttag |
153 |
Q |
| |
|
|||| ||||| |||||||||| |||||||||| ||| | ||||||| |||||||||||||||||| ||| |||||| |||||||||||||||| || |
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|
| T |
38243979 |
cttcatcaactacttcagcattgaaactcttgagtgcaatatgacctcttggaaaatcaatatcataatattctttattgataactgatccaggtcctaa |
38244078 |
T |
|
| Q |
154 |
ctcaaattttggggacaaaaacactgctgattttat |
189 |
Q |
| |
|
||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
38244079 |
ctcgaattttggggacaaaaatacagctgattttat |
38244114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 300
Target Start/End: Original strand, 38227508 - 38227758
Alignment:
| Q |
50 |
ccagcttcntcaacaacttcagcatcaaaactcttgattgctacatgaccttttggaaaatcaatatcatcataaaatttatttataactgatccaggtc |
149 |
Q |
| |
|
||||| || ||||| |||||||||| |||||||| | ||||| ||| ||| |||||||||||||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
38227508 |
ccagcatcatcaactacttcagcattgaaactctttagtgctatatgccctcttggaaaatcaatatcataataatgtttattgataactgatccaggtc |
38227607 |
T |
|
| Q |
150 |
ttagctcaaattttggggacaaaaacactgctgattttatcctttcttcggtcttctcgtaagaacttgagcatggtgtgcttaataacaccacangtat |
249 |
Q |
| |
|
|| ||||| || ||||||| ||| || |||||||| || | ||||||| |||| | | ||||||||||||| ||| | || || | | | |||| |
|
|
| T |
38227608 |
caagttcaaacttaggggacagaaaaacagctgatttgattttatcttcggccttcacaaaggaacttgagcatgttgtaccaaacaatagtagaagtat |
38227707 |
T |
|
| Q |
250 |
ggcaagtgaaagtacaaaatctctaggtacaaacaacatgctgatctgtca |
300 |
Q |
| |
|
|| | ||| |||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
38227708 |
tgcctctaaaaatacaaaatctctagatacaaaacacatgctgatctgtca |
38227758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 15913032 - 15912953
Alignment:
| Q |
77 |
aaactcttgattgctacatgaccttttggaaaatcaatatcatcataaaatttatttataactgatccaggtcttagctc |
156 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||||||||||| || ||| || | ||||||||||||||||||| |||||| |
|
|
| T |
15913032 |
aaactcttgagtgctatgtgacctcttggaaaatcaatattatattaatatctttttataactgatccaggtcctagctc |
15912953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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