View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_8_76 (Length: 530)
Name: J5_8_76
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_8_76 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 26033358 - 26033083
Alignment:
| Q |
1 |
atcttcacacctgttcaccgctctcagaaaccaaacaacgaatttgcacgaaccaagtatgaaaaaatattgtgaatcggtacgtgcgaaccggttcgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26033358 |
atcttcacacctgttcaccgctctcagaaaccaaacaacgaatttgcacgaaccaagtatgaaaaaatattgtgaatcggtacgtgcgaaccggttcgtg |
26033259 |
T |
|
| Q |
101 |
gttctcagggggaagtggcgaattatgtaattatgttcctaacattatataaaaaatagatcatttataactatcgatgtgattatgaggaaaaaacaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26033258 |
gttctcagggggaagtggcgaattatgtaattatgttcctaacattatataaaaaatagatcatttataactatcgatgtgattatgaggaaaaaacaac |
26033159 |
T |
|
| Q |
201 |
tgatgaaaagataataattatgataatttgcattatgcatcaacaaactgtgaggagattgagtttcatagcaatt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26033158 |
tgatgaaaagataataattatgataatttgcattatgcatcaacaaactgtgaggagattgagtttcatagcaatt |
26033083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 373 - 530
Target Start/End: Complemental strand, 26033511 - 26033354
Alignment:
| Q |
373 |
gcagacagctttggagacactttttaattacttctctcatcgagaactggtgcttttctatccaacttaatgagaacctcttcatctttaccaaatcatt |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26033511 |
gcagacagctttggagacactttttaattacttctctcatcgagaactggtgcttttctatccaacttaatgagaacctcttcatctttaccaaatcatt |
26033412 |
T |
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| Q |
473 |
aacagtgaacaacttcatcttccatggtttcaaaaactttgactcaaaagctaatctt |
530 |
Q |
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| T |
26033411 |
aacagtgaacaacttcatcttccatggtttcaaaaactttgactcaaaagctaatctt |
26033354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 26033611 - 26033570
Alignment:
| Q |
273 |
aattcagtacatgaagaggtatacagagtcggttcgcttgtc |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
26033611 |
aattcagtacatgaagaggtatacagagtcggttcgcttgtc |
26033570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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