View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5_8_85 (Length: 705)
Name: J5_8_85
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_8_85 |
 | |
|
| [»] scaffold1344 (1 HSPs) |
| | |
|
| [»] scaffold0854 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 593; Significance: 0; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Original strand, 26117463 - 26118095
Alignment:
| Q |
1 |
ttcatcacatacttatatgttgcttctgataaatgatttctttttaaagccacaccttttgtttttggccaattccaattatcataattatccatgagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26117463 |
ttcatcacatacttatatgttgcttctgataaatgatttctttttaaagccacaccttttgtttttggccaattccaattatcataattatccatgagaa |
26117562 |
T |
|
| Q |
101 |
aatacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggataacttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26117563 |
aatacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggataacttc |
26117662 |
T |
|
| Q |
201 |
aaatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaattttacaataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26117663 |
aaatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaattttacaataa |
26117762 |
T |
|
| Q |
301 |
agcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacgaatgttgatcaataact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26117763 |
agcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacgaatgttgatcaataact |
26117862 |
T |
|
| Q |
401 |
gaattgattttggtaatgataggtgggtatttgatagtttcaaaattcgaagccctaccatattttcaaagagtgaagtggggacatcctcagaatcatc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26117863 |
gaattgattttggtaatgataggtgggtatttgatagtttcaaaattcgaagccctaccatattttcaaagagtgaagtggggacatcctcagaatcatc |
26117962 |
T |
|
| Q |
501 |
catggacgtgttcgcaattagaatctcaagcttagagccatcaaacccagaggaatataaatccattagatttccttggaagaacaaata-ttgata-tc |
598 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
26117963 |
catggacgtgtttgcaattagaatctcaagcttagagccatcaaacccagaggaatataaatccattagatttccttggaagaacaaatatttgatattc |
26118062 |
T |
|
| Q |
599 |
ctactcctatc-accaatgac-tttgatttttt |
629 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| |
|
|
| T |
26118063 |
ttactcctatcaaccaatgacttttgatttttt |
26118095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Original strand, 26239727 - 26240359
Alignment:
| Q |
1 |
ttcatcacatacttatatgttgcttctgataaatgatttctttttaaagccacaccttttgtttttggccaattccaattatcataattatccatgagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||||| | ||||||| |||||| |
|
|
| T |
26239727 |
ttcatcacatacttatatgttgcttctgataaatgatttctttctaaagccacactttttgtttctggccatttccaattacgagaattatcagtgagaa |
26239826 |
T |
|
| Q |
101 |
aatacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggataacttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||| | || |||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
26239827 |
aatacctttccaatgtaggtaaggttatttccttacaaaactcattgaaactataactaaagtacaattcttcaagtgatgggcatctctggataacttc |
26239926 |
T |
|
| Q |
201 |
aaatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaattttacaataa |
300 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
26239927 |
aaatggattattgcttctaattttacaatctctcaatgacaacagtctaagtttcttcaacattgcaatttcaggggaaaattcataaatttcacaataa |
26240026 |
T |
|
| Q |
301 |
agcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacgaatgttgatcaataact |
400 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26240027 |
tccaattcaagagtttcaagactttgcaggcttccaaaaatagagatgtcacccaaaatgacacattcaactgatagagaacgaatgttgatcaataact |
26240126 |
T |
|
| Q |
401 |
gaattgattttggtaatgataggtgggtatttgatagtttcaaaattcgaagccctaccatattttcaaagagtgaagtggggacatcctcagaatcatc |
500 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
26240127 |
gaattgattttggtaatgatagaggggtatttgatagtttcaaaattcgaagccctgccatattttcaaaaagtgaagtggggacatccttagaatcatc |
26240226 |
T |
|
| Q |
501 |
catggacgtgttcgcaattagaatctcaagcttagagccatcaaacccagaggaatataaatccattagatttccttggaagaacaaata-ttgata-tc |
598 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
26240227 |
catggacgtgtttgcaattagaatctcaagcttagagccatcaaaccaagaggaacataaatccattagatttccttggaagaacaaatatttgatattc |
26240326 |
T |
|
| Q |
599 |
ctactcctatc-accaatgac-tttgatttttt |
629 |
Q |
| |
|
||||||| || ||||||||| ||||||||||| |
|
|
| T |
26240327 |
ttactcctttcaaccaatgacttttgatttttt |
26240359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 96 - 592
Target Start/End: Original strand, 26145562 - 26146052
Alignment:
| Q |
96 |
gagaaaatacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggata |
195 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||||||| |||||| |
|
|
| T |
26145562 |
gagaagatacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactatgactgaagtacaattcttcaagtgatgggcatctatggata |
26145661 |
T |
|
| Q |
196 |
acttcaaatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaattttac |
295 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| | ||||| ||||| |||||| || |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26145662 |
acttcaaatggattattgcttctaatttgacaccatctcaagctcaacaatctaaggttattcaacattgcaatttcaggggaaaattcatcaattttgc |
26145761 |
T |
|
| Q |
296 |
aataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacgaatgttgatcaa |
395 |
Q |
| |
|
|| || |||||||||||| |||||||||||||| |||||||||| |||||||||||||||| |||||||||| | |||||||||| ||||| ||| |
|
|
| T |
26145762 |
aagaatgcaattcaagagtctcaagactttgcagtgttcccaaaatagagatgtcacccaaattgacattttcaattaatagagaacggatgttctccaa |
26145861 |
T |
|
| Q |
396 |
taactgaattgattttggtaatgataggtgggtatttgatagtttcaaaattcgaagccctaccatattttcaaagagtgaagtggggacatcctcagaa |
495 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| || |||||||||||||||| ||||||||||| ||| ||||||| ||||||||||| | |
|
|
| T |
26145862 |
taactgaattgattttggtaatgatag------atgtgataattgcaaaattcgaagccctgccatattttcagagaatgaagtgcggacatcctcaaac |
26145955 |
T |
|
| Q |
496 |
tcatccatggacgtgttcgcaattagaatctcaagcttagagccatcaaacccagaggaatataaatccattagatttccttggaagaacaaatatt |
592 |
Q |
| |
|
|||||||||| | || ||||||| ||||||||||||||| ||||||||| || |||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26145956 |
gcatccatggatttttttgcaattaaaatctcaagcttagatgcatcaaacctagtggaaaataaatccattagttttccttggaagaacaaatatt |
26146052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 95 - 420
Target Start/End: Original strand, 26212608 - 26212933
Alignment:
| Q |
95 |
tgagaaaatacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggat |
194 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| | |||| | | ||||||||| | |||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
26212608 |
tgagaacatacctttccaatctaggtaaggttatttctttacaagatttattgaaactcttcaagaagtacaattcttcaagtgatgggcaactctggat |
26212707 |
T |
|
| Q |
195 |
aacttcaaatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaatttta |
294 |
Q |
| |
|
||||||||||||||||||| || ||||| |||| ||| ||||| ||||| |||||||||||||||| ||||||||||| |||||||||||||||||| | |
|
|
| T |
26212708 |
aacttcaaatggattattgtttttaatttcacattctttcaagcacaacaatctaagtttcttcaactttgcaatttcacgggaaaattcatcaatttca |
26212807 |
T |
|
| Q |
295 |
caataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacgaatgttgatca |
394 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
26212808 |
caataatgcaattcaagagtctcaagactttgcaggcttcccaaaacagagatgtcccccaaaatgactttttcaactgatagagaacgaatattgatca |
26212907 |
T |
|
| Q |
395 |
ataactgaattgattttggtaatgat |
420 |
Q |
| |
|
||||| |||||| |||| ||||||| |
|
|
| T |
26212908 |
ttaacttaattgaatttgctaatgat |
26212933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 97 - 420
Target Start/End: Original strand, 26184003 - 26184326
Alignment:
| Q |
97 |
agaaaatacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggataa |
196 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||| | |||| | | ||||||||| | |||||||||||||||| | ||||||||| |||||||||| |
|
|
| T |
26184003 |
agaacatacctttccaatctaggtaaggttatttctttacaagatttattgaaactcttcaagaagtacaattcttcaagtgatgggcaactctggataa |
26184102 |
T |
|
| Q |
197 |
cttcaaatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaattttaca |
296 |
Q |
| |
|
||||||||||||||||| || ||||| |||| ||| ||||| ||||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||| |
|
|
| T |
26184103 |
cttcaaatggattattgtttttaatttcacattctttcaagcacaacaatctaagtttcttcaactttgcaatttcacgggaaaattcatcaatttcaca |
26184202 |
T |
|
| Q |
297 |
ataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacgaatgttgatcaat |
396 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||| | |
|
|
| T |
26184203 |
ataatgcaactcaagagtctcaagactttgcaggcttcccaaaacagagatgtcgcccaaaatgacgttttcaactgatagagaacgaatattgatcatt |
26184302 |
T |
|
| Q |
397 |
aactgaattgattttggtaatgat |
420 |
Q |
| |
|
|||| |||||| |||| ||||||| |
|
|
| T |
26184303 |
aacttaattgaatttgctaatgat |
26184326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 102 - 422
Target Start/End: Original strand, 18081556 - 18081876
Alignment:
| Q |
102 |
atacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggataacttca |
201 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||| | ||||| |||||| |||||||||||| |
|
|
| T |
18081556 |
atacctttccaatgcaggtaaggttatttcctgacaaaaattgttaaaactatgacagaagtacaattcttcaagtgatgtgcatctttggataacttca |
18081655 |
T |
|
| Q |
202 |
aatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaattttacaataaa |
301 |
Q |
| |
|
| ||||| || ||| ||||| |||| | | ||||| ||||||||| |||||||||| | ||||||| | || ||||||||||| ||| | | |
|
|
| T |
18081656 |
ataggattgttacttctaatttcacatttttccaagttcaacagtctcagtttcttcagtttctgaatttcacatggaagttcatcaatttgacagtgat |
18081755 |
T |
|
| Q |
302 |
gcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacgaatgttgatcaat-aact |
400 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||| |||||||| ||||||| | || |||||||| ||||||||||||| || |||||| |||| |
|
|
| T |
18081756 |
ccaattcaagagtctctagactttgcaggcttcccaaaatagagatgttacccaaatagactctttcaactaatagagaacgaatattcatcaatgaact |
18081855 |
T |
|
| Q |
401 |
gaattgattttggtaatgatag |
422 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
18081856 |
-aattgattgtggtaatgatag |
18081876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 102 - 386
Target Start/End: Complemental strand, 27343744 - 27343460
Alignment:
| Q |
102 |
atacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggataacttca |
201 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| ||||||| |||||||||| | |||||||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
27343744 |
atacctttgcaatgttggtaaggttatttccttacaaaaaccattgaaactatccaagaagtacaattcttcaagtgatgggcatctttggataacttca |
27343645 |
T |
|
| Q |
202 |
aatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaattttacaataaa |
301 |
Q |
| |
|
||||| ||||| || ||||| ||| | | ||| | ||||| ||||| ||||||| || |||||||| | | || ||||||||||| ||||| | |
|
|
| T |
27343644 |
aatgggttattatttctaattttacacttttccaacttcaacaatctaaaattcttcagtttttcaatttcatgaggaagttcatcaatttcacaatgag |
27343545 |
T |
|
| Q |
302 |
gcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacgaat |
386 |
Q |
| |
|
||| ||||||| ||||||||||||||| ||| |||||||| ||||||| |||| ||| ||| ||| ||||||||||||||| |
|
|
| T |
27343544 |
tcaactcaagagtctcaagactttgcaggcctccaaaaacagaaatgtcactcaaaacaacttttgcaaatgatagagaacgaat |
27343460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 95 - 386
Target Start/End: Complemental strand, 27370049 - 27369758
Alignment:
| Q |
95 |
tgagaaaatacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggat |
194 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||| | ||||||||||||||| | ||||| |||||| ||||| |
|
|
| T |
27370049 |
tgagaaaatacctttgcaatgttggtaaggttatttccttacaagaatcattgaaactattcatgaagtacaattcttcaagtgatgtgcatctttggat |
27369950 |
T |
|
| Q |
195 |
aacttcaaatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaatttta |
294 |
Q |
| |
|
||||||||||| | ||| || ||| | ||||| | |||| ||||||| ||||| |||| || || |||||||| | | || |||||||||| || |
|
|
| T |
27369949 |
tacttcaaatgggtcattatttctaactttacaatttttcaactccaacaatctaaaattctccagtttttcaatttcacgaggaagttcatcaattgta |
27369850 |
T |
|
| Q |
295 |
caataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacgaat |
386 |
Q |
| |
|
|| | | ||| ||||||| ||||||||||||||| ||| ||| |||| |||||||||||| |||| |||||| ||||||||||||||| |
|
|
| T |
27369849 |
catttagtcaactcaagagtctcaagactttgcaggcctccaaaaccagaaatgtcacccaaatcaacactttcaaatgatagagaacgaat |
27369758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 102 - 383
Target Start/End: Original strand, 18723685 - 18723966
Alignment:
| Q |
102 |
atacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggataacttca |
201 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| |||| ||||||||||||| | |||||||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
18723685 |
atacctttgcaatgttggtaaggttatttccttacaagaatcattgaaactattcaagaagtacaattcttcaagtgatgggcatctttggataacttca |
18723784 |
T |
|
| Q |
202 |
aatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaattttacaataaa |
301 |
Q |
| |
|
||||| ||||| || ||||| ||| | | |||| ||||||| ||||| |||| || || |||||||| | | || |||||||||| ||||| | |
|
|
| T |
18723785 |
aatgggttattatttctaattttacattttttcaactccaacaatctaaaattctccagtttttcaatttcacgaggaagttcatcaattgcacaatgag |
18723884 |
T |
|
| Q |
302 |
gcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacg |
383 |
Q |
| |
|
||||||||| | ||||||| ||||||| ||| | |||| |||||||||||| || ||||||| |||||||||||| |
|
|
| T |
18723885 |
tcaattcaagtgtctcaagaccttgcaggcctccaattgcagaaatgtcacccaaatcaaatttttcaaatgatagagaacg |
18723966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 28129539 - 28129462
Alignment:
| Q |
280 |
aattcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||| ||||| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
28129539 |
aattcatcaattttacaatcatccaaatcaagagtctcaaggctttgcaggtttcccaaaatagagatgtcacccaaa |
28129462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 28143467 - 28143390
Alignment:
| Q |
280 |
aattcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||| ||||| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
28143467 |
aattcatcaattttacaatcatccaaatcaagagtctcaaggctttgcaggtttcccaaaatagagatgtcacccaaa |
28143390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 28513865 - 28513939
Alignment:
| Q |
283 |
tcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||| ||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
28513865 |
tcatcaattttacaataattcaaatcaagagtctcaaggcttcgcaggtttcccaaaatagagatgtcacccaaa |
28513939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 27909387 - 27909310
Alignment:
| Q |
280 |
aattcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||| | ||||||||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
27909387 |
aattcatcaatgttacaataatccaaatcaagtgtctcaagactttgcaggtttcccaaaatagagatttcacccaaa |
27909310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 28472843 - 28472920
Alignment:
| Q |
280 |
aattcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||||| ||| ||||| ||||||||| ||||||||| |||||| |
|
|
| T |
28472843 |
aattcatcaattttacaataactcaaatcaagagtctcaaggcttcgcaggtttcccaaaatagagatgtcgcccaaa |
28472920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 28492887 - 28492961
Alignment:
| Q |
283 |
tcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||| ||||| ||| |||| |||| |||||||||||||||| |
|
|
| T |
28492887 |
tcatcaattttacaataattcaaatcaagagtctcaaggctttgaaggtttccaaaaatagagatgtcacccaaa |
28492961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 28078993 - 28078916
Alignment:
| Q |
280 |
aattcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
|||||||||||||||||| || || ||||||| ||||| ||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
28078993 |
aattcatcaattttacaaaaatataaatcaagagtctcaaggcttcgcaggtttcccaaaatagagatgtcacccaaa |
28078916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 592
Target Start/End: Original strand, 18081991 - 18082067
Alignment:
| Q |
516 |
aattagaatctcaagcttagagccatcaaacccagaggaatataaatccattagatttccttggaagaacaaatatt |
592 |
Q |
| |
|
||||||||||||||| ||||| |||| |||| |||| ||| |||||||| ||||||| |||| | | |||||||||| |
|
|
| T |
18081991 |
aattagaatctcaagtttagacccataaaactcagatgaaaataaatcctttagattcccttcgcataacaaatatt |
18082067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 17749881 - 17749931
Alignment:
| Q |
307 |
tcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
17749881 |
tcaagagtctcaaggctttgcaggtttcccaaaatagagatgtcacccaaa |
17749931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 19051201 - 19051251
Alignment:
| Q |
307 |
tcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
19051201 |
tcaagagtctcaaggctttgcaggtttcccaaaatagagatgtcacccaaa |
19051251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 490
Target Start/End: Original strand, 26212965 - 26213015
Alignment:
| Q |
440 |
tcaaaattcgaagccctaccatattttcaaagagtgaagtggggacatcct |
490 |
Q |
| |
|
|||||| |||||||||| |||||||||||| || ||||||| ||||||||| |
|
|
| T |
26212965 |
tcaaaactcgaagccctgccatattttcaaggaatgaagtgtggacatcct |
26213015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 11408383 - 11408306
Alignment:
| Q |
280 |
aattcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
||||||||||||| |||| | ||| ||||||| ||||| ||||||||| || |||||| |||||||||||||||| |
|
|
| T |
11408383 |
aattcatcaatttcacaaccatccaaatcaagagtctcaaggctttgcaggtttaccaaaatagagatgtcacccaaa |
11408306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 26213033 - 26213062
Alignment:
| Q |
514 |
gcaattagaatctcaagcttagagccatca |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26213033 |
gcaattagaatctcaagcttagagccatca |
26213062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 28047020 - 28046943
Alignment:
| Q |
280 |
aattcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
||||||||||| ||||||| ||| ||||| | ||||||||||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
28047020 |
aattcatcaatgcgacaataatccaaatcaagcgtctcaagactttgaaggtttcccaaaatagagatgtcacccaaa |
28046943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 28177622 - 28177545
Alignment:
| Q |
280 |
aattcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
|||||||||||||||||| | ||| ||||| | || |||||||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
28177622 |
aattcatcaattttacaaccatccaaatcaagtgtctctagactttgaaggtttcccaaaatagagatgtcacccaaa |
28177545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1344 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold1344
Description:
Target: scaffold1344; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 102 - 422
Target Start/End: Complemental strand, 431 - 111
Alignment:
| Q |
102 |
atacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggataacttca |
201 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| |||||||||||||||||| | |||||||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
431 |
atacctttgcaatgttggtaaggttatttccttacaaaaatcattgaaactattcaagaagtacaattcttcaagtgatgggcatctttggataacttca |
332 |
T |
|
| Q |
202 |
aatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaattttacaataaa |
301 |
Q |
| |
|
||||| ||||| || ||||| |||||| | |||| ||||||| ||||| |||| || || ||||||| || | || ||| | |||| |||||| |
|
|
| T |
331 |
aatgggttattatttctaatttcacaatttttcaactccaacaatctaaaattctccagtttttcaatttcgggaggaagttcgttaattgcacaatagt |
232 |
T |
|
| Q |
302 |
gcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacgaatgttgatcaataactg |
401 |
Q |
| |
|
||| ||||||| ||||||||||||||| |||| |||||||| |||||||||||| ||||||| ||| ||||||||||||||| || | |||| || |
|
|
| T |
231 |
tcaactcaagagtctcaagactttgcaggcttccaaaaacagaaatgtcacccaaatcaacatttccaaatgatagagaacgaatattcaacaatggctt |
132 |
T |
|
| Q |
402 |
aattgattttggtaatgatag |
422 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
131 |
cattgattgtggtaatgatag |
111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 102 - 422
Target Start/End: Original strand, 4740 - 5060
Alignment:
| Q |
102 |
atacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggataacttca |
201 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| |||| ||||| ||||||| | ||| |||||||||||| | | || ||||||| |||||||||||| |
|
|
| T |
4740 |
atacctttgcaatgttggtaaggttatttccttacaagaatcaatgaaactattcaagatgtacaattcttcaagtaattggcatctttggataacttca |
4839 |
T |
|
| Q |
202 |
aatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaattttacaataaa |
301 |
Q |
| |
|
||||| ||||| || ||||| |||||| | |||| ||||||| ||||| |||| | || ||||||| || | || ||| | |||| |||||| |
|
|
| T |
4840 |
aatgggttattatttctaatttcacaatttttcaactccaacaatctaaaattctctagtttttcaatttcgggaggaagttcgttaattgcacaatagt |
4939 |
T |
|
| Q |
302 |
gcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacgaatgttgatcaataactg |
401 |
Q |
| |
|
||| ||||||| ||||||||||||||| |||| |||||||| |||||||||||| ||| ||| ||| ||||||||||||||| || | |||| || |
|
|
| T |
4940 |
tcaactcaagagtctcaagactttgcaggcttccaaaaacagaaatgtcacccaaatcaacttttccaaatgatagagaacgaatattcaacaatggctt |
5039 |
T |
|
| Q |
402 |
aattgattttggtaatgatag |
422 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
5040 |
cattgattgtggtaatgatag |
5060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 95 - 422
Target Start/End: Original strand, 73502 - 73829
Alignment:
| Q |
95 |
tgagaaaatacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttccaatgatgggcatctctggat |
194 |
Q |
| |
|
||||| |||| |||| |||||| |||||||||||||||| |||| ||||||||||||| | |||||||||||||||| | ||||| |||||| ||||| |
|
|
| T |
73502 |
tgagacaatatctttgcaatgttggtaaggttatttccttacaagaatcattgaaactattcaagaagtacaattcttcaagtgatgtgcatctttggat |
73601 |
T |
|
| Q |
195 |
aacttcaaatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaacattgcaatttcaggggaaaattcatcaatttta |
294 |
Q |
| |
|
|||||||||||| ||||| || |||| ||| | | ||| ||||| ||||| |||||||| || |||||||| | | || |||||||||| | |
|
|
| T |
73602 |
aacttcaaatgggttattatttctaatataacacttttccaacgtcaacaatctaaaattcttcaatttttcaatttcatgaggaagttcatcaattgca |
73701 |
T |
|
| Q |
295 |
caataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaacattttcaactgatagagaacgaatgttgatca |
394 |
Q |
| |
|
|||| | ||||||||||| ||||||||||||||| ||| |||||||| ||||||| |||| ||| | | ||| ||||||||||||||| || || |
|
|
| T |
73702 |
caatgagtcaattcaagagtctcaagactttgcaggcctccaaaaacagaaatgtcactcaaatcaacttgtgcaaatgatagagaacgaatattcgaca |
73801 |
T |
|
| Q |
395 |
ataactgaattgattttggtaatgatag |
422 |
Q |
| |
|
||| || ||||||| |||||||||||| |
|
|
| T |
73802 |
atagctccattgattgtggtaatgatag |
73829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 9330780 - 9330857
Alignment:
| Q |
280 |
aattcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
|||||||||||| |||||| | ||| ||||||| |||||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
9330780 |
aattcatcaattgtacaatgattcaaatcaagagtctcaagactttgcagggtttccaaaatagagatgtcatccaaa |
9330857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 9384563 - 9384640
Alignment:
| Q |
280 |
aattcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
|||||||||||| |||||| | ||| ||||||| |||||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
9384563 |
aattcatcaattgtacaatgattcaaatcaagagtctcaagactttgcagggtttccaaaatagagatgtcatccaaa |
9384640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 8695210 - 8695285
Alignment:
| Q |
282 |
ttcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaa |
357 |
Q |
| |
|
||||||||||||||||| | ||| ||||| | ||||||||||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
8695210 |
ttcatcaattttacaatgatccaaatcaagcgtctcaagactttgtaggtttcccaaaatagagatgtcacccaaa |
8695285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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