View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_8_94 (Length: 546)
Name: J5_8_94
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_8_94 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 60 - 546
Target Start/End: Original strand, 43777229 - 43777715
Alignment:
| Q |
60 |
aattcaatgcaatcacaaagtgaaacaatccatgaccgtctcgtcgagattgggctgtcctaaaaaacatatttagatattttttaaaactaaaattatt |
159 |
Q |
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| T |
43777229 |
aattcaatgcaatcacaaagtgaaacaatccatgaccgtctcgtcgagattgggctgtcctaaaaaacatatttagatattttttaaaactaaaattatt |
43777328 |
T |
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| Q |
160 |
gactttgaactctagatcatctgacctcaatcgaacggtcacattgacagtgtgactggatgcagtctgtgattgcacagaatcctggtcccttccattg |
259 |
Q |
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| T |
43777329 |
gactttgaactctagatcatctgacctcaatcgaacggtcacattgacagtgtgactggatgcagtctgtgattgcacagaatcctggtcccttccattg |
43777428 |
T |
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| Q |
260 |
acaccagttcaccttgaatccatatcaggcatcatatcaaccataaaaagcacgatttgaagttgcaaatatgtgtatgtaatgaaactcaatggagggt |
359 |
Q |
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| T |
43777429 |
acaccagttcaccttgaatccatatcaggcatcatatcaaccataaaaagcatgatttgaagttgcaaatatgtgtatgtaatgaaactcaatggagggt |
43777528 |
T |
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| Q |
360 |
gtgctaccaaaataggggcatcccttcttataattgtcacccaaaaagcaacattaatgtgtcagttacaacaattttcattagnnnnnnnnnnnnnnna |
459 |
Q |
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| T |
43777529 |
gtgctaccaaaataggggcatcccttcttataattgtcacccaaaaagcaacattaatgtgtcagttacaacaattttcattagtttttcatttttttta |
43777628 |
T |
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| Q |
460 |
gtgaggatgcatggatttggaagaaagttacaaatattctaatgtagcagtaattttgactttagaatgttcgtattttttccaaat |
546 |
Q |
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| T |
43777629 |
gtgaggatgcatggatttggaagaaagttacaaatattctaatgtagcagtaattttgactttagaatgttcgtattttttccaaat |
43777715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 43777711 - 43777774
Alignment:
| Q |
1 |
caaatattcttt-gatatttgtaaagagtggtaacttcctagaaatttgttgcaacttgcaatt |
63 |
Q |
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| T |
43777711 |
caaatattcttttgatatttgtaaagagttgtaacttcctagaaatttgttgcaacttgcaatt |
43777774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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