View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_8_95 (Length: 598)
Name: J5_8_95
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] J5_8_95 |
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[»] chr5 (17 HSPs) |
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[»] chr3 (7 HSPs) |
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[»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 212 - 598
Target Start/End: Original strand, 8840349 - 8840735
Alignment:
Q |
212 |
aattgcagggattctatgaatggtcagtgaccatgacatcataaacaatcataaaactnnnnnnngtttaagaaagactaagaaaatataggaagcgaag |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
T |
8840349 |
aattgcagggattctatgaatggtcagtgaccatgacatcataaacaatcataaaactaaaaaaagtttaagaaagactaagaaaatataggaagcgaag |
8840448 |
T |
|
Q |
312 |
aatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaaggaaactttttcatgatccaactgac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
8840449 |
aatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaaggaaactttttcatgatccaactgac |
8840548 |
T |
|
Q |
412 |
caaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcggattatgcaatccgaaagtctc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
8840549 |
caaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcggattatgcaatccgaaagtctc |
8840648 |
T |
|
Q |
512 |
taaatgttttcggattctacaattcgaacaatacctgactatgtttaagttttatttttgaagtgntttcntggcgaatgacatagg |
598 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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|
T |
8840649 |
taaatgttttcggattctacaattcgaacaatacctgactatgtttaagttttatttttgaagtgttttcatggcgaatgacatagg |
8840735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 8840765 - 8840866
Alignment:
Q |
35 |
taatcaagcaacttcaaacaacacaataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatccaactagcttgccaat |
134 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
8840765 |
taatcaagcaacttcaaacaacacaataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatccaactagcttgccaat |
8840864 |
T |
|
Q |
135 |
tg |
136 |
Q |
|
|
|| |
|
|
T |
8840865 |
tg |
8840866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 277 - 464
Target Start/End: Complemental strand, 27690588 - 27690401
Alignment:
Q |
277 |
gtttaagaaagactaagaaaatataggaagcgaagaatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaact |
376 |
Q |
|
|
|||||||||| |||||||| || ||||| |||||||||||||||||||| ||| ||||| | |||||||||| | || | |||||||| ||||| |
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|
T |
27690588 |
gtttaagaaaatgtaagaaaagatgggaagtgaagaatgaatgaaattgttgaag-atgcaagcatatttatagccttaaatcagtcctagaccataact |
27690490 |
T |
|
Q |
377 |
acaatcaaaggaaactttttc-atgatccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccac |
464 |
Q |
|
|
||| ||||||||| | ||||| ||| |||||| |||||||||| |||||||||| |||||||| |||||||||| | ||||||||||| |
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|
T |
27690489 |
acagtcaaaggaagcgttttccatggtccaaccgaccaaaaatgcattaaacacttcacaaaccgtccaaacctttgatgaaacgccac |
27690401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 310 - 495
Target Start/End: Complemental strand, 22417463 - 22417278
Alignment:
Q |
310 |
agaatgaatgaaattgttaaagcatgcaggactatttatag-cttataacctgtcctagattgtaactacaatcaaaggaaactttttcatgatccaact |
408 |
Q |
|
|
||||| |||||| ||||| ||||||||| ||||||||||| | || || || ||||||| |||||||||| ||||||||||| || ||| ||| |
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T |
22417463 |
agaatcaatgaatttgttgaagcatgcaagactatttatattcgta-aatctatcctagactgtaactacagtcaaaggaaacattccaatgcataaacc |
22417365 |
T |
|
Q |
409 |
gaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcggattat |
495 |
Q |
|
|
|||||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||| || |||||||||||| |||||| |
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|
T |
22417364 |
gaccaaaaatactttaaacacaccacaaactgttcaaaccttgggtgaaacgccacaatccacacagtctgggaggtttcagattat |
22417278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 36520507 - 36520430
Alignment:
Q |
40 |
aagcaacttcaaacaacacaataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgat |
117 |
Q |
|
|
||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||| | ||| ||||||||||||| |
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|
T |
36520507 |
aagcagcttaaaacaacacaataacataagtgatgaatcttctaggaaggtgttcaagcaggtgcttttgtacttgat |
36520430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 312 - 505
Target Start/End: Complemental strand, 36520754 - 36520560
Alignment:
Q |
312 |
aatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaaggaaactttttc-atgatccaactga |
410 |
Q |
|
|
|||||||||||||||| || |||||| ||||||||||| | |||| ||| |||||| |||||||| | |||||||| ||||| ||| || || |
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|
T |
36520754 |
aatgaatgaaattgttgaaccatgcaattctatttatagccttaaaccagtcatagattataactacagtgaaaggaaatattttccatgctcggaccag |
36520655 |
T |
|
Q |
411 |
ccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcggattatgcaatccgaa |
505 |
Q |
|
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|||||| |||||||||||||||||||||| |||||||||| |||| || |||| ||||| || |||||||||||| ||| | ||||||||| |
|
|
T |
36520654 |
ccaaaattacattaaacacaccacaaaccgcccaaaccttgtgtgacacaccacactccacataatctgggaggtttcatattttacaatccgaa |
36520560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 277 - 464
Target Start/End: Original strand, 28443086 - 28443273
Alignment:
Q |
277 |
gtttaagaaagactaagaaaatataggaagcgaagaatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaact |
376 |
Q |
|
|
|||||||||| | |||||||| || ||||| ||||||| ||||| ||||| || ||||| ||||||||||| | ||||| |||||||| ||||| |
|
|
T |
28443086 |
gtttaagaaaaagtaagaaaagatgggaagtgaagaattaatgactttgttgaat-atgcaaatctatttatagccttaaacctttcctagatcataact |
28443184 |
T |
|
Q |
377 |
acaatcaaaggaaac-tttttcatgatccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccac |
464 |
Q |
|
|
||| ||||| || || ||||||||| ||||| |||||||| |||||||||||||||||| | ||||||| || ||| ||||||||| |
|
|
T |
28443185 |
acagtcaaatgatacgtttttcatggcccaaccatccaaaaatgcattaaacacaccacaaatcgtccaaacatttggttaaacgccac |
28443273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 409 - 487
Target Start/End: Complemental strand, 22407533 - 22407455
Alignment:
Q |
409 |
gaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggttt |
487 |
Q |
|
|
|||||||||||||||||||||||||||||| || ||| |||||||||||||| || ||||| || ||||||||||| |
|
|
T |
22407533 |
gaccaaaaatacattaaacacaccacaaactgtctaaatcttgggtgaaacgcgacagtccacacagtctgggaggttt |
22407455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 455
Target Start/End: Complemental strand, 16490263 - 16490110
Alignment:
Q |
303 |
gaagcgaagaatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaaggaaactttttc-atga |
401 |
Q |
|
|
|||| ||||||||||| || ||||| | |||||| ||||||||||||| || | ||||||| |||||||||| |||||||| || ||| | ||| |
|
|
T |
16490263 |
gaagtgaagaatgaattaatatgttataacatgcaagactatttatagccataaaattatcctagactgtaactacattcaaaggatacgtttacgatgc |
16490164 |
T |
|
Q |
402 |
tccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtg |
455 |
Q |
|
|
||| ||||||||||||||||||||||||||||||| || ||||||| |||| |
|
|
T |
16490163 |
ctaaaccgaccaaaaatacattaaacacaccacaaaccgtcaaaacctttggtg |
16490110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 372 - 460
Target Start/End: Original strand, 32695106 - 32695195
Alignment:
Q |
372 |
taactacaatcaaaggaaacttttt-catgatccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacg |
460 |
Q |
|
|
|||||||||||||||||| | |||| |||| ||||| | |||||||| ||||||| |||||||||||| ||||||| || ||||||||| |
|
|
T |
32695106 |
taactacaatcaaaggaagcgttttacatggcccaaccgtccaaaaatgcattaaatacaccacaaaccgtccaaacttttggtgaaacg |
32695195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 464
Target Start/End: Original strand, 32285542 - 32285666
Alignment:
Q |
341 |
ctatttatagcttataacctgtcctagattgtaactacaatcaaaggaaactttttc-atgatccaactgaccaaaaatacattaaacacaccacaaacc |
439 |
Q |
|
|
||||||||||| | ||| | |||||||| |||||||| ||||||||| | ||||| | | |||||| || |||||||||||||||||||||||||| |
|
|
T |
32285542 |
ctatttatagccttaaacatatcctagatcataactacagtcaaaggaagcgttttccaaggcccaactatcccaaaatacattaaacacaccacaaacc |
32285641 |
T |
|
Q |
440 |
atccaaaccttgggtgaaacgccac |
464 |
Q |
|
|
|||||| || ||||||||||||| |
|
|
T |
32285642 |
gtccaaatttttggtgaaacgccac |
32285666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 25724251 - 25724168
Alignment:
Q |
50 |
aaacaacacaataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatccaactagcttgccaa |
133 |
Q |
|
|
|||||||||||||||| |||||||||||||| | |||||||||| |||| ||| ||||||| | |||||| || || |||||| |
|
|
T |
25724251 |
aaacaacacaataacataagtgatgaatcttttgggaaggtgttcgaagaggtgcttttgtattagatccagctggcctgccaa |
25724168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 27690221 - 27690138
Alignment:
Q |
50 |
aaacaacacaataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatccaactagcttgccaa |
133 |
Q |
|
|
|||||| | ||||||| ||||||||||| |||| |||||||||| |||| ||||||||||||||| ||| ||||| |||||| |
|
|
T |
27690221 |
aaacaagaaaataacataagtgatgaatattcttggaaggtgttcgaagaggtgattttgtacttgttcctgctagcctgccaa |
27690138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 10134656 - 10134596
Alignment:
Q |
59 |
aataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatcc |
119 |
Q |
|
|
||||| |||||||||||||||||| ||||||||| |||| ||||||||| ||||||||| |
|
|
T |
10134656 |
aataatagaagtgatgaatcttcttgaaaggtgttcgaagaggtgattttgcacttgatcc |
10134596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 28443464 - 28443524
Alignment:
Q |
59 |
aataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatcc |
119 |
Q |
|
|
||||||| |||||||||||||||| |||||||||| |||| ||| ||||| ||||||||| |
|
|
T |
28443464 |
aataacataagtgatgaatcttcttggaaggtgttcgaagaggtgcttttgaacttgatcc |
28443524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 13909973 - 13909917
Alignment:
Q |
407 |
ctgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgcca |
463 |
Q |
|
|
||||||||||| | |||||| ||||||||||||||| ||||||| ||| ||||||| |
|
|
T |
13909973 |
ctgaccaaaaaaatattaaaaacaccacaaaccatcaaaacctttagtgtaacgcca |
13909917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 449
Target Start/End: Complemental strand, 16726794 - 16726758
Alignment:
Q |
413 |
aaaaatacattaaacacaccacaaaccatccaaacct |
449 |
Q |
|
|
|||||||||||||||||||| ||||| |||||||||| |
|
|
T |
16726794 |
aaaaatacattaaacacaccccaaactatccaaacct |
16726758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 212 - 598
Target Start/End: Complemental strand, 20860585 - 20860195
Alignment:
Q |
212 |
aattgcagggattctatgaatggtcag---tgaccatgacatcataaacaatcataaaactnnnnnnn-gtttaagaaagactaagaaaatataggaagc |
307 |
Q |
|
|
||||||| ||||||||||||||||||| ||||||| ||||||||| || | ||||||| |||||||||| |||||||| || |||| |
|
|
T |
20860585 |
aattgcaaggattctatgaatggtcagcaatgaccataacatcataagcacttctaaaacttaaaaaaagtttaagaaaacataagaaaagatgagaagt |
20860486 |
T |
|
Q |
308 |
gaagaatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaaggaaac-tttttcatgatccaa |
406 |
Q |
|
|
|| ||||||||||||||||| ||||||| | | ||||||||||| | |||||||||||| | |||||||||| ||| ||||| ||||||||| ||||| |
|
|
T |
20860485 |
gatgaatgaatgaaattgttgaagcatgtaaggctatttatagccttaaacctgtcctaggctctaactacaatgaaatgaaacatttttcatgctccaa |
20860386 |
T |
|
Q |
407 |
ctgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcggattatgcaatccgaaa |
506 |
Q |
|
|
| || |||||||||||||||||| |||||||| || |||||||||||||||| ||||| ||||| ||| |||||||||||| |||||| |||| |||| |
|
|
T |
20860385 |
ccgatcaaaaatacattaaacac-ccacaaactattcaaaccttgggtgaaatgccacaatccacgtagtctgggaggtttcagattatacaatatgaaa |
20860287 |
T |
|
Q |
507 |
gtctctaaatgttttcggattctacaattcgaacaatacctgactatgtttaagttttatttttgaagtgntttcntggcgaatgacatagg |
598 |
Q |
|
|
||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||| ||||||| || |||| |||||| ||||||||| |
|
|
T |
20860286 |
ctctctaaatattttcggattctacaatctgaacaacaccagaatgtgtttaagtttgatttttggaggattttcatggcgattgacatagg |
20860195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 310 - 464
Target Start/End: Original strand, 29582249 - 29582404
Alignment:
Q |
310 |
agaatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaaggaaactttttca-tgatccaact |
408 |
Q |
|
|
||||| |||||| ||||| ||||||||| | || |||||| | ||||| |||||||||||||||||| | ||||||||| ||| || || |||||| |
|
|
T |
29582249 |
agaattaatgaatttgttgaagcatgcaagggtacttataggtataaacctatcctagattgtaactacagtaaaaggaaacatttacaatgttccaacc |
29582348 |
T |
|
Q |
409 |
gaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccac |
464 |
Q |
|
|
|||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
T |
29582349 |
gaccgaaaatgcattaaacacaccacaaatcatccaaaccttgggtgaaacgccac |
29582404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 20860156 - 20860073
Alignment:
Q |
43 |
caacttcaaacaacacaataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatccaactagc |
126 |
Q |
|
|
|||||| |||||||||||||| ||||||||| |||||||| |||| ||||| |||| ||| |||||| ||||||||||||||| |
|
|
T |
20860156 |
caacttaaaacaacacaataatagaagtgatcaatcttctgggaagatgttcgaagaggtgcttttgtgcttgatccaactagc |
20860073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 36337847 - 36337920
Alignment:
Q |
50 |
aaacaacacaataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatccaact |
123 |
Q |
|
|
|||||||| |||||||||||||||||| ||| |||| || ||| |||| ||| ||||||||||||||||||| |
|
|
T |
36337847 |
aaacaacataataacagaagtgatgaaatatctgagaatgttttcgaagaggtgcttttgtacttgatccaact |
36337920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 464
Target Start/End: Complemental strand, 25214573 - 25214522
Alignment:
Q |
413 |
aaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccac |
464 |
Q |
|
|
|||||| ||||||||| |||||||||| |||||||||| | ||||||||||| |
|
|
T |
25214573 |
aaaaatgcattaaacataccacaaaccgtccaaacctttgctgaaacgccac |
25214522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 455
Target Start/End: Original strand, 36337629 - 36337671
Alignment:
Q |
413 |
aaaaatacattaaacacaccacaaaccatccaaaccttgggtg |
455 |
Q |
|
|
|||||| |||||||||||||||||||| ||||||| ||||||| |
|
|
T |
36337629 |
aaaaatgcattaaacacaccacaaaccgtccaaactttgggtg |
36337671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 446
Target Start/End: Complemental strand, 40152984 - 40152950
Alignment:
Q |
412 |
caaaaatacattaaacacaccacaaaccatccaaa |
446 |
Q |
|
|
|||||||||||||||||||||||||||||| |||| |
|
|
T |
40152984 |
caaaaatacattaaacacaccacaaaccattcaaa |
40152950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 303 - 570
Target Start/End: Complemental strand, 28640080 - 28639812
Alignment:
Q |
303 |
gaagcgaagaatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaaggaaacttttt-catga |
401 |
Q |
|
|
|||| ||||||| |||||||||||| ||||||||| | ||||||||||| | || | ||||||| | |||||||| ||||||||||| |||| |||| |
|
|
T |
28640080 |
gaagtgaagaataaatgaaattgttgaagcatgcaaggctatttatagccttaaatcattcctagactataactacagtcaaaggaaacattttacatgg |
28639981 |
T |
|
Q |
402 |
tccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcggattatgcaatc |
501 |
Q |
|
|
|||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| | ||| ||| || |||||||| |||||| |||| |
|
|
T |
28639980 |
tccaaccgaccaaaaatgcattaaacacaccacaaaccatccaaaccttagatgaaacgccacaattcacctagtatgtgaggtttcagattattcaatt |
28639881 |
T |
|
Q |
502 |
cgaaagtctctaaatgttttcggattctacaattcgaacaatacctgactatgtttaagttttattttt |
570 |
Q |
|
|
||||| ||||||||| |||| |||| |||||| |||| || | | |||||||||||||||| |||||| |
|
|
T |
28639880 |
cgaaactctctaaatattttaagattatacaatccgaataacatcagactatgtttaagtttgattttt |
28639812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 392 - 515
Target Start/End: Complemental strand, 35990069 - 35989946
Alignment:
Q |
392 |
tttttcatgatccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcgga |
491 |
Q |
|
|
|||| |||| |||||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||| |||||| |||||||| |
|
|
T |
35990069 |
ttttccatggtccaaccgaccaaaaatgcattaaacacaccacaaaccgtccaaacattgggtgaaacgccacaatccacctagtctgggatgtttcgga |
35989970 |
T |
|
Q |
492 |
ttatgcaatccgaaagtctctaaa |
515 |
Q |
|
|
|| | |||||||||| ||| |||| |
|
|
T |
35989969 |
ttttacaatccgaaactctataaa |
35989946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 383 - 570
Target Start/End: Complemental strand, 41932600 - 41932412
Alignment:
Q |
383 |
aaaggaaacttttt-catgatccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctggg |
481 |
Q |
|
|
||||||||| |||| |||| | ||||||||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||| ||||| ||| || | |
|
|
T |
41932600 |
aaaggaaacattttacatggttcaactgaccaaaaatgcattaaacacaccacaaaccgtcccaacctttggtgaaacgccacaatccacctagtttgag |
41932501 |
T |
|
Q |
482 |
aggtttcggattatgcaatccgaaagtctctaaatgttttcggattctacaattcgaacaatacctgactatgtttaagttttattttt |
570 |
Q |
|
|
|| ||||||||||| |||||| || | ||| ||| |||||||||| || ||| |||| || || |||| ||||||||||| |||||| |
|
|
T |
41932500 |
agttttcggattatacaatccaaacctttcttaatattttcggattgtataatccgaataacacgagactgtgtttaagtttcattttt |
41932412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 308 - 458
Target Start/End: Complemental strand, 48182497 - 48182347
Alignment:
Q |
308 |
gaagaatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaaggaaactttttca-tgatccaa |
406 |
Q |
|
|
|||||||||||||||||||| ||||||||| |||||||| | | | ||||| ||||||| ||||| |||||||||| ||| |||||| || ||||| |
|
|
T |
48182497 |
gaagaatgaatgaaattgttgaagcatgcaaaactatttaaaaccttaaacctatcctagactgtaaatacaatcaaacataacgttttcaatgctccaa |
48182398 |
T |
|
Q |
407 |
ctgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaa |
458 |
Q |
|
|
| ||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
T |
48182397 |
ccgaccaaaaatacattaaacacaccacaaa-cagtcaaaccttgggtgaaa |
48182347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 35989829 - 35989752
Alignment:
Q |
43 |
caacttcaaacaacacaataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatcca |
120 |
Q |
|
|
|||||| |||||||| |||||||||||||||||||||||| |||||||||| |||| || ||||||||||||||||| |
|
|
T |
35989829 |
caacttaaaacaacataataacagaagtgatgaatcttctgggaaggtgttcgaagatgtaattttgtacttgatcca |
35989752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 383 - 570
Target Start/End: Complemental strand, 41933522 - 41933334
Alignment:
Q |
383 |
aaaggaaacttttt-catgatccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctggg |
481 |
Q |
|
|
||||||||| |||| |||| | |||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| ||||| ||| || | |
|
|
T |
41933522 |
aaaggaaacattttacatggttcaacggaccaaaaatggattaaacacaccacaaaccgtccaaacctttggtgaaacgccacaatccacctagtttgag |
41933423 |
T |
|
Q |
482 |
aggtttcggattatgcaatccgaaagtctctaaatgttttcggattctacaattcgaacaatacctgactatgtttaagttttattttt |
570 |
Q |
|
|
|| ||||| ||||| |||| | || | ||| ||| |||||||||| || ||| |||| || || |||| ||||||||||| |||||| |
|
|
T |
41933422 |
agttttcgaattatacaattcaaacctttcttaatattttcggattgtataatccgaataacacgagactgtgtttaagtttcattttt |
41933334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 28639744 - 28639662
Alignment:
Q |
50 |
aaacaacacaataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatccaactagcttgcca |
132 |
Q |
|
|
|||||||||||||| | |||||||||||||| || ||||||| ||||||| ||| |||||||||||||||| || |||||||| |
|
|
T |
28639744 |
aaacaacacaataatataagtgatgaatcttttaggaaggtgctcaaagaggtgcttttgtacttgatccagctggcttgcca |
28639662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 41933273 - 41933190
Alignment:
Q |
43 |
caacttcaaacaacacaataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatccaactagc |
126 |
Q |
|
|
|||||| |||||||||||||||| |||||||| |||||||| |||||||||| |||| || ||||||||||| |||| ||||| |
|
|
T |
41933273 |
caacttaaaacaacacaataacataagtgatggatcttctaggaaggtgttcgaagagatgcttttgtacttgctccagctagc |
41933190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 493
Target Start/End: Original strand, 7134538 - 7134736
Alignment:
Q |
294 |
aaaatataggaagcgaagaatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaaggaaactt |
393 |
Q |
|
|
||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||| ||| | | || ||||| |||||||| | ||| ||||| | |
|
|
T |
7134538 |
aaaatatgggaagtgaagaatgaatgaaattgttgaagcatgcaatgctatttataactttaatacattcgtagatcataactacagttaaatgaaacgt |
7134637 |
T |
|
Q |
394 |
tttca-tgatccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcggat |
492 |
Q |
|
|
||||| || ||||| || |||||| ||||||| ||||||||| || | |||||||||||||||| |||| || ||| || |||||||||||| ||| |
|
|
T |
7134638 |
tttcattgctccaaacgatcaaaaacacattaa--acaccacaatccgtttaaaccttgggtgaaacaccacatttcacctaatctgggaggtttcagat |
7134735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 464
Target Start/End: Original strand, 34549900 - 34550024
Alignment:
Q |
341 |
ctatttatagcttataacctgtcctagattgtaactacaatcaaaggaaactttttc-atgatccaactgaccaaaaatacattaaacacaccacaaacc |
439 |
Q |
|
|
||||||||||| || ||| ||||||||| |||||||||| ||| |||| ||||| | ||||||| | ||||||| ||||||||||||||| |||| |
|
|
T |
34549900 |
ctatttatagcctaaaacaagtcctagatcataactacaattaaataaaacgttttccaccatccaaccgttcaaaaattcattaaacacaccactaacc |
34549999 |
T |
|
Q |
440 |
atccaaaccttgggtgaaacgccac |
464 |
Q |
|
|
|||||||||| |||||||||||| |
|
|
T |
34550000 |
gtccaaacctttagtgaaacgccac |
34550024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 7134459 - 7134511
Alignment:
Q |
212 |
aattgcagggattctatgaatggtcagtgaccatgacatcataaacaatcataaaa |
267 |
Q |
|
|
|||||||| ||||||||||||||| ||||||||||| |||||||| |||||||| |
|
|
T |
7134459 |
aattgcagagattctatgaatggt---tgaccatgacaccataaacactcataaaa |
7134511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 28640158 - 28640126
Alignment:
Q |
226 |
tatgaatggtcagtgaccatgacatcataaaca |
258 |
Q |
|
|
|||||| |||||||||||||||||||||||||| |
|
|
T |
28640158 |
tatgaacggtcagtgaccatgacatcataaaca |
28640126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 4401454 - 4401370
Alignment:
Q |
131 |
caattgtgtctggttgggttggatcttcaatgtatagtggtttatatttggttttgatgcaatgacaggtttcacagcaagaatt |
215 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
4401454 |
caattgtgtctggttgggttggatcttcaatgtatagtggtttatatttggttttgatgcaatgacaggtttcacagcaagaatt |
4401370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 402 - 461
Target Start/End: Original strand, 17519961 - 17520020
Alignment:
Q |
402 |
tccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgc |
461 |
Q |
|
|
|||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||||| |
|
|
T |
17519961 |
tccaaccgaccaaaaattcattaaacacaccactaaccatccaaacctttggtgaaacgc |
17520020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 33555167 - 33555082
Alignment:
Q |
410 |
accaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcggattat |
495 |
Q |
|
|
||||||||| ||||||| |||||||||||| | ||||||||||||| ||||||| ||||| || ||||||||||||||||||| |
|
|
T |
33555167 |
accaaaaatgcattaaatacaccacaaaccgttcaaaccttgggtgttacgccacaatccacacagtctgggaggtttcggattat |
33555082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 33174510 - 33174452
Alignment:
Q |
59 |
aataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgat |
117 |
Q |
|
|
|||||||||||||| ||| ||||| |||||||||| |||| ||| ||||||||||||| |
|
|
T |
33174510 |
aataacagaagtgaagaaacttcttggaaggtgttcgaagatgtgcttttgtacttgat |
33174452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 33555270 - 33555190
Alignment:
Q |
308 |
gaagaatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaagga |
388 |
Q |
|
|
|||||||||||||| |||| || |||||| | |||||||||||| ||| | ||||||| |||||||||| |||||||| |
|
|
T |
33555270 |
gaagaatgaatgaatatgttgaaccatgcaaggctatttatagctataaacatatcctagactgtaactacagtcaaagga |
33555190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 311 - 571
Target Start/End: Original strand, 815596 - 815857
Alignment:
Q |
311 |
gaatgaatgaaattgttaaagcatgcaggactatttatag-cttataacctgtcctagattgtaactacaatcaaaggaaac-tttttcatgatccaact |
408 |
Q |
|
|
||||||||||||||||| | ||||||| | |||||||||| |||| ||| |||||||| |||||||| ||||||||||| ||||||||| |||||| |
|
|
T |
815596 |
gaatgaatgaaattgttgatgcatgcaagcctatttatagtctta-aacaagtcctagaccataactacattcaaaggaaacgtttttcatggtccaacc |
815694 |
T |
|
Q |
409 |
gaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcggattatgcaatccgaaagt |
508 |
Q |
|
|
|||||||||| |||||||||||||||||||| || ||||||| ||||||||| || |||||| ||| | | | | ||| ||||||| |||||| || | |
|
|
T |
815695 |
gaccaaaaatgcattaaacacaccacaaaccgtctaaacctttggtgaaacgtcatattccacctagtccgagggtttttggattatacaatccaaacct |
815794 |
T |
|
Q |
509 |
ctctaaatgttttcggattctacaattcgaacaatacctgactatgtttaagttttatttttg |
571 |
Q |
|
|
||||||| |||| ||||| || |||||||| | ||| |||| ||||||||||| ||||||| |
|
|
T |
815795 |
gtctaaatatttttggattgtataattcgaatagcaccagactttgtttaagtttcatttttg |
815857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 815922 - 815961
Alignment:
Q |
43 |
caacttcaaacaacacaataacagaagtgatgaatcttct |
82 |
Q |
|
|
|||||| |||||||||||||||| |||||||||||||||| |
|
|
T |
815922 |
caacttaaaacaacacaataacataagtgatgaatcttct |
815961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 464
Target Start/End: Complemental strand, 21649701 - 21649647
Alignment:
Q |
411 |
ccaaaaatacattaaacacaccacaaaccatccaaa-ccttgggtgaaacgccac |
464 |
Q |
|
|
|||||||| |||||||||||||||||||| |||||| | |||| ||||||||||| |
|
|
T |
21649701 |
ccaaaaattcattaaacacaccacaaaccgtccaaatctttggatgaaacgccac |
21649647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 470
Target Start/End: Complemental strand, 25631377 - 25631319
Alignment:
Q |
412 |
caaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttcca |
470 |
Q |
|
|
||||||| ||||||||||||||| ||| |||||||||| |||||||||| ||| |||| |
|
|
T |
25631377 |
caaaaatgcattaaacacaccactaactgtccaaacctttggtgaaacgctacggtcca |
25631319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 310 - 571
Target Start/End: Original strand, 52598248 - 52598508
Alignment:
Q |
310 |
agaatgaatgaaattgttaaagcatgcaggactatttatagcttataa-cctgtcctagattgtaactacaatcaaaggaaactttttcat-gatccaac |
407 |
Q |
|
|
|||| ||||||| ||||| ||||||||| |||||| ||||| | |||| ||| |||||||||||||||||| ||||| ||||| ||| || | |||||| |
|
|
T |
52598248 |
agaaagaatgaatttgttgaagcatgcaagactatgtatag-tcataaacctatcctagattgtaactacagtcaaaagaaacgtttacaaagctccaac |
52598346 |
T |
|
Q |
408 |
tgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcggattatgcaatccgaaag |
507 |
Q |
|
|
||||||||||| ||| |||||||||| ||| ||||||||| ||||||||||||| ||||| || |||| ||||||| ||| || |||| |||| |
|
|
T |
52598347 |
cgaccaaaaatatattgaacacaccacgaactgtccaaacctctggtgaaacgccacaatccacacagtctggaaggtttccgatcatataatctgaaa- |
52598445 |
T |
|
Q |
508 |
tctctaaatgttttcggattctacaattcgaacaatacctgactatgtttaagttttatttttg |
571 |
Q |
|
|
|| ||||| |||| ||||| || ||| |||||| ||| |||| | ||||||||| ||||||| |
|
|
T |
52598446 |
-ctataaatatttttggattgtataatccgaacaccaccagactctttttaagtttgatttttg |
52598508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 308 - 386
Target Start/End: Original strand, 19509167 - 19509245
Alignment:
Q |
308 |
gaagaatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaag |
386 |
Q |
|
|
|||||||||||||||||||| ||| ||||| ||||||||||| || ||||| || |||||||||||||||||||||| |
|
|
T |
19509167 |
gaagaatgaatgaaattgttgaagtatgcaagactatttataactataaacctatcttagattgtaactacaatcaaag |
19509245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 279 - 429
Target Start/End: Original strand, 42247161 - 42247312
Alignment:
Q |
279 |
ttaagaaagactaagaaaatataggaagcgaagaatgaatgaaattgttaaagcatgcaggactatttatag-cttataacctgtcctagattgtaacta |
377 |
Q |
|
|
|||||||| | ||||||| || ||| | |||||||||||||||||||| ||||||| | | |||||||||| | || ||||| ||||||||||||| || |
|
|
T |
42247161 |
ttaagaaaaagtaagaaatgatgggaggtgaagaatgaatgaaattgttgaagcatgaaag-ctatttatagtcata-aacctatcctagattgtaatta |
42247258 |
T |
|
Q |
378 |
caatcaaaggaaacttttt--catgatccaactgaccaaaaatacattaaacac |
429 |
Q |
|
|
| |||||||||||||||| ||| | ||||||||||||||| ||||||||| |
|
|
T |
42247259 |
tagtcaaaggaaacttttttcaatgcttcaactgaccaaaaatgtattaaacac |
42247312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 20516778 - 20516831
Alignment:
Q |
411 |
ccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccac |
464 |
Q |
|
|
|||||||| ||||||||||| ||| |||| |||||||||| ||||||||||||| |
|
|
T |
20516778 |
ccaaaaattcattaaacacatcactaaccgtccaaacctttggtgaaacgccac |
20516831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 463
Target Start/End: Complemental strand, 34953595 - 34953533
Alignment:
Q |
401 |
atccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgcca |
463 |
Q |
|
|
||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||||| |
|
|
T |
34953595 |
atccaaccgtccaaaaatgcattaaacactccactaaccgtccaaaccattggtgaaacgcca |
34953533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 40602858 - 40602911
Alignment:
Q |
411 |
ccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccac |
464 |
Q |
|
|
||||||| |||||||||| |||| |||| |||||||||| ||||||||||||| |
|
|
T |
40602858 |
ccaaaaaatcattaaacaccccactaaccgtccaaacctttggtgaaacgccac |
40602911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 50867416 - 50867497
Alignment:
Q |
308 |
gaagaatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaaggaa |
389 |
Q |
|
|
||||||||||||||| ||| ||| ||||| | ||||||||||| || | ||||||||||||||||||| ||||||||| |
|
|
T |
50867416 |
gaagaatgaatgaaaacgttgaaggatgcaaggctatttatagccataaaacggtcctagattgtaactacagtcaaaggaa |
50867497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 52598565 - 52598638
Alignment:
Q |
50 |
aaacaacacaataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatccaact |
123 |
Q |
|
|
|||||||| ||||||| |||||||||| ||| | ||| ||||| |||| ||| ||||||||||||||||||| |
|
|
T |
52598565 |
aaacaacataataacataagtgatgaaacttttgggaatgtgtttgaagaggtgtttttgtacttgatccaact |
52598638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 396 - 597
Target Start/End: Complemental strand, 32124484 - 32124283
Alignment:
Q |
396 |
tcatgatccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcggattat |
495 |
Q |
|
|
||||| |||||| |||||||||| ||||||| |||| | ||||| |||||| ||||||||||||| || | ||| ||| |||||||||||| |||||| |
|
|
T |
32124484 |
tcatggtccaaccgaccaaaaatgcattaaagacacaaaaaaccgtccaaatcttgggtgaaacgtcatagtgcacatagtctgggaggtttcagattat |
32124385 |
T |
|
Q |
496 |
gcaatccgaaagtctctaaatgttttcggattctacaattcgaacaatacctgactatgtttaagttttatttttgaagtgntttcntggcgaatgacat |
595 |
Q |
|
|
|||| || |||||||| |||||| ||| || ||| |||||| ||| |||| ||||||||||| ||||||| || | |||| |||| |||||||| |
|
|
T |
32124384 |
ataatctcaactgctctaaatattttcgaattatataatctgaacaacaccagactgtgtttaagtttgatttttggagagctttcgtggcaaatgacat |
32124285 |
T |
|
Q |
596 |
ag |
597 |
Q |
|
|
|| |
|
|
T |
32124284 |
ag |
32124283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 309 - 464
Target Start/End: Complemental strand, 17865192 - 17865037
Alignment:
Q |
309 |
aagaatgaatgaaattgttaaagcatgcaggactatttatag-cttataacctgtcctagattgtaactacaatcaaaggaaactttttc-atgatccaa |
406 |
Q |
|
|
|||||||||| |||||||| || ||||| | |||||||||| |||| ||| ||| |||| | |||||||||||||||||||| ||||| || | ||| |
|
|
T |
17865192 |
aagaatgaataaaattgttgaacaatgcaaggctatttatagtctta-aactagtcatagactataactacaatcaaaggaaacgttttccatagttcaa |
17865094 |
T |
|
Q |
407 |
ctgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccac |
464 |
Q |
|
|
| ||||||||| ||||||||| ||||||||| | |||||||||||||||| ||||| |
|
|
T |
17865093 |
ca-accaaaaatgaattaaacacgccacaaaccgttcaaaccttgggtgaaaagccac |
17865037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 32124231 - 32124157
Alignment:
Q |
59 |
aataacagaagtgatgaatcttctaagaaggtgttcaaagaagtgattttgtacttgatccaactagcttgccaa |
133 |
Q |
|
|
||||| |||| |||| ||||||| | ||||||||||||||| || ||||||||||||||||||| || |||||| |
|
|
T |
32124231 |
aataatagaaatgataaatcttcaagaaaggtgttcaaagaactgcttttgtacttgatccaactggcctgccaa |
32124157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 372 - 464
Target Start/End: Original strand, 42012320 - 42012413
Alignment:
Q |
372 |
taactacaatcaaaggaaactttttc-atgatccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccac |
464 |
Q |
|
|
|||||| | ||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||| |||| || ||||||||||||| |||||||| |
|
|
T |
42012320 |
taactatagtcaaaggaaacattttctatggtccaactaaccaaaaatacattaaacacgccataaacaattcaaaccttgggtgcaacgccac |
42012413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 500
Target Start/End: Original strand, 18500446 - 18500536
Alignment:
Q |
410 |
accaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttccacttagcctgggaggtttcggattatgcaat |
500 |
Q |
|
|
||||||||| |||||||||||||||||| | |||||||||| |||||||| ||| |||| ||| ||| |||||||| |||||| |||| |
|
|
T |
18500446 |
accaaaaatgcattaaacacaccacaaatcgtccaaacctttggtgaaacatcaccgtccaactagtctgagaggtttcagattatacaat |
18500536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 48374322 - 48374406
Alignment:
Q |
308 |
gaagaatgaatgaaat-tgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaaggaaac |
391 |
Q |
|
|
|||||||||||| | | |||| ||||||||| |||||||| || | | ||||| || ||||||||||||||||||||||||||| |
|
|
T |
48374322 |
gaagaatgaatggagtatgttgaagcatgcaagactatttgtaaccttaaacctatcttagattgtaactacaatcaaaggaaac |
48374406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 3600997 - 3600952
Alignment:
Q |
405 |
aactgaccaaaaatacattaaacacaccacaaaccatccaaacctt |
450 |
Q |
|
|
||||| |||||||| ||||||||||||||| |||| |||||||||| |
|
|
T |
3600997 |
aactgtccaaaaattcattaaacacaccactaaccgtccaaacctt |
3600952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 464
Target Start/End: Original strand, 19647067 - 19647111
Alignment:
Q |
420 |
cattaaacacaccacaaaccatccaaaccttgggtgaaacgccac |
464 |
Q |
|
|
|||||||||| |||| ||| ||||||||||| ||||||||||||| |
|
|
T |
19647067 |
cattaaacactccactaactatccaaacctttggtgaaacgccac |
19647111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 7206 - 7282
Alignment:
Q |
311 |
gaatgaatgaaattgttaaagcatgcaggactatttatagcttataacctgtcctagattgtaactacaatcaaagg |
387 |
Q |
|
|
||||||||||| |||| ||||||||| | ||||||||||| || || |||||||||||||||||| ||||||| |
|
|
T |
7206 |
gaatgaatgaatatgttgaagcatgcaaggctatttatagccataaaactatcctagattgtaactacagtcaaagg |
7282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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